FC920229

Overview
NameFC920229
Unique NameFC920229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_SULSO (Translation initiation factor 2 subunit gamma OS=Sulfolobus solfataricus GN=eif2g PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 65/136 (47.79%), Postives = 87/136 (63.97%), Query Frame = 1
Query:  298 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS----GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            Q  +NIG +GHV HGK+T+V+AI+G+ T +   EL+R +TIKLGYA   I  CE   C +P  Y    S    G +D P            K LR +SF+D PGH++LMATML+GAA+MDGA+L++AANE  P+ Q
Sbjct:    7 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES--CKKPEAYVTEPSCKSCGSDDEP------------KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQ 128          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_PYRFU (Translation initiation factor 2 subunit gamma OS=Pyrococcus furiosus GN=eif2g PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            +RQA +NIG +GHV HGK+T+ KA++GV T     EL R ITIK+G+A+A+I +C +  C R             +P+C   G E    + +R VSF+D PGH+ LM TML GA++MDGA+L+IAANE CPR Q
Sbjct:    7 TRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCSN--CGR----------YSTSPICPYCGHET---EFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METMP (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis GN=eif2g PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.541e-28
Identity = 65/134 (48.51%), Postives = 92/134 (68.66%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY     GK+    CD  G    +++ LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CP+ Q
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV---GKK----CDSCGG---KLQTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_PYRHO (Translation initiation factor 2 subunit gamma OS=Pyrococcus horikoshii GN=eif2g PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            +RQA +NIG +GHV HGK+T+ KA++GV T     EL R ITIK+G+A+A+I +C       P C +        +P+C   G E    + +R VSF+D PGH+ LM TML GA++MDGA+L+IAANE CPR Q
Sbjct:    7 TRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC-------PNCGR-----YSTSPVCPYCGHET---EFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METM7 (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 63/134 (47.01%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY         +  CD  G    ++  LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CP+ Q
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV-------DKKCDACGG---KVSTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METM5 (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY     GK+    CD  G    ++  LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CP+ Q
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV---GKK----CDSCGG---KLVTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_SULTO (Translation initiation factor 2 subunit gamma OS=Sulfolobus tokodaii GN=eif2g PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = 1
Query:  298 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            Q  +NIG +GHV HGK+T+V+AI+GV T +   EL+R +TIKLGYA A I  C +  C +P  Y    S       C+  G +  + + LR VSF+D PGH+ILMATML+GAA+MDGALL++AANE  P+ Q
Sbjct:   11 QPEVNIGVVGHVDHGKTTLVQAITGVWTSKHSEELKRGMTIKLGYAEASIGVCPN--CNKPEAYVTEYS-------CNQCGSDE-KPQFLRKVSFIDAPGHEILMATMLSGAALMDGALLVVAANEPFPQPQ 132          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METM6 (Translation initiation factor 2 subunit gamma OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 63/134 (47.01%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY         +  CD  G    ++  LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CP+ Q
Sbjct:    4 SNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCET--CDEPECYTV-------DKKCDACGG---KVDTLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METVS (Translation initiation factor 2 subunit gamma OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 63/136 (46.32%), Postives = 91/136 (66.91%), Query Frame = 1
Query:  286 VISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            V S Q+ +NIG +GHV HGK+++ + ++GV T     EL+R I+I+LGYA+ +I KCE   C  P CY         +  CD     + +++ LR +SFVD PGH+ LMATML+GA++MDGA+L+IAA+E CP+ Q
Sbjct:    2 VASNQSEVNIGMVGHVDHGKTSLTRKLTGVWTDTHSEELKRGISIRLGYADCEIKKCES--CNEPECYTV-------DKKCDCC---SGKVETLRKISFVDAPGHETLMATMLSGASLMDGAILVIAASEECPQPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: SUV39_DROME (Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila melanogaster GN=Su(var)3-9 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 64/78 (82.05%), Postives = 68/78 (87.18%), Query Frame = 1
Query:  220 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYK 453
            + L +QDLS LDV+KL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKL   + K  K
Sbjct:   12 RNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLERLSEKKIK 89          
The following BLAST results are available for this feature:
BLAST of FC920229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IF2G_SULSO5.774e-2847.79Translation initiation factor 2 subunit gamma OS=S... [more]
IF2G_PYRFU7.541e-2848.51Translation initiation factor 2 subunit gamma OS=P... [more]
IF2G_METMP7.541e-2848.51Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_PYRHO9.848e-2848.51Translation initiation factor 2 subunit gamma OS=P... [more]
IF2G_METM71.680e-2747.01Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METM51.680e-2748.51Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_SULTO2.194e-2750.76Translation initiation factor 2 subunit gamma OS=S... [more]
IF2G_METM62.194e-2747.01Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METVS2.865e-2746.32Translation initiation factor 2 subunit gamma OS=M... [more]
SUV39_DROME3.742e-2782.05Histone-lysine N-methyltransferase Su(var)3-9 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC32005F04EF RVDevelop1 Citrus clementina cDNA clone C32005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920229 ID=FC920229; Name=FC920229; organism=Citrus clementina; type=EST; length=696bp
GGATCGCAAGAAGTCCCCCAAAACCTAAAATTCTCTCTCACACACACACC
CTCTCACAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCTCGCAG
TCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTTG
AACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAGA
AACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAGT
TGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCAG
GCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAAC
TGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAAT
TAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATAC
AAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATGG
AAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAACT
GCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCAT
GATATTCTTATGGCTACNATGCTTAATGGAGCAGCAATTATGGATGGAGC
ATTGCTTCTCATAGCAGCCAATGAAAGNTGCCCCCGCACACAACAT
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