FC920229

Overview
NameFC920229
Unique NameFC920229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_THEVO (Translation initiation factor 2 subunit gamma OS=Thermoplasma volcanium GN=eif2g PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 65/132 (49.24%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  298 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            Q T+NIG +GHV HGKST+  A++GV+T     E++R I+IKLGYA+  +YK          CY A G     NP       ENC ++  R +S VD PGH+ LMATML+G+A+M+GALL+IAANE CP+ Q
Sbjct:    9 QPTVNIGMVGHVDHGKSTLTLALTGVKTDTHSEEIKRGISIKLGYADTPVYK----------CYDASG-----NPYYTRQPSENCELE--RVISIVDAPGHETLMATMLSGSALMNGALLVIAANEHCPQPQ 123          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METJA (Translation initiation factor 2 subunit gamma OS=Methanocaldococcus jannaschii GN=eif2g PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENC--RMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            ++QA +NIG +GHV HGK+++ KA++GV T R   EL R I+I+LGYA+ +I KC       P C                P   NC    + LR VSFVD PGH+ LMATML+GA++MDGA+L+IAANE CP+ Q
Sbjct:    7 AKQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKC-------PQC----------GTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_HALSA (Translation initiation factor 2 subunit gamma OS=Halobacterium salinarium GN=eif2g PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            RQ  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A + +C D  C  P CY    +  E +   ++           R VSFVD PGH+ LMATML+GAA+MDGA+L++ ANE  P+ Q
Sbjct:    6 RQPEVNIGLVGHVDHGKTTLVRALSGEWTDQHSEEMKRGISIRLGYADATLRRCPD--CDEPECYTVAETCPEHDTATEIE----------RTVSFVDAPGHETLMATMLSGAALMDGAVLVVGANEPVPQPQ 126          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_HALS3 (Translation initiation factor 2 subunit gamma OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            RQ  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A + +C D  C  P CY    +  E +   ++           R VSFVD PGH+ LMATML+GAA+MDGA+L++ ANE  P+ Q
Sbjct:    6 RQPEVNIGLVGHVDHGKTTLVRALSGEWTDQHSEEMKRGISIRLGYADATLRRCPD--CDEPECYTVAETCPEHDTATEIE----------RTVSFVDAPGHETLMATMLSGAALMDGAVLVVGANEPVPQPQ 126          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: SUV39_DROPS (Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila pseudoobscura pseudoobscura GN=Su(var)3-9 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.572e-25
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1
Query:  220 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYK 453
            + L +QDL  L+V+ L PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKL   + K  K
Sbjct:   12 RNLQKQDLRNLEVSNLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLERLSEKKIK 89          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METKA (Translation initiation factor 2 subunit gamma OS=Methanopyrus kandleri GN=eif2g PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.575e-25
Identity = 66/133 (49.62%), Postives = 83/133 (62.41%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            +QA +NIG +GHV HGK+T+ KA+SGV T     E  R I+I+LGYA+  +      RCP    Y    S +E  P C          + LR VSFVD PGH+ LMATML+GAAIMD A+L+IAANE CP+ Q
Sbjct:    7 QQAEMNIGMVGHVDHGKTTLTKALSGVWTDTHSEETRRGISIRLGYADTVL-----TRCPECDTY----SVEEKCPEC------GAETEWLRRVSFVDSPGHETLMATMLSGAAIMDAAILVIAANEPCPQPQ 124          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_META3 (Translation initiation factor 2 subunit gamma OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.975e-25
Identity = 59/133 (44.36%), Postives = 87/133 (65.41%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            +Q+ INIG +GHV HGK+++ + ++G  T     EL+R I+I+LGYA+ +I KC   +C  P  Y    S  +  P+C        + K+ R +SFVD PGH+ LMATML+GA++M+GA+L+IAA E CP+ Q
Sbjct:    5 KQSEINIGMVGHVDHGKTSLTRQLTGTWTDTHSEELKRGISIRLGYADCEIMKCP--KCGAPEAY----SVSKTCPVCGT------KTKMSRKISFVDAPGHETLMATMLSGASLMNGAILVIAATEKCPQPQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_PYRKO (Translation initiation factor 2 subunit gamma OS=Pyrococcus kodakaraensis GN=eif2g PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE 675
            RQA +NIG +GHV HGK+T+ KA++G+ T     EL R ITIK+G+A+A+I KC       P C K        +P+C   G E    +  R VSF+D PGH+ LM TML GA++MDGA+L+IAANE
Sbjct:    8 RQAEVNIGMVGHVDHGKTTLTKALTGIWTDTHSEELRRGITIKIGFADAEIRKC-------PHCGK-----YSTSPVCPYCGHET---EFERRVSFIDAPGHEALMTTMLAGASLMDGAVLVIAANE 119          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_THEON (Translation initiation factor 2 subunit gamma OS=Thermococcus onnurineus (strain NA1) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 61/127 (48.03%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE 675
            RQA +NIG +GHV HGK+T+ KA++G+ T     EL R ITIK+G+A+A+I KC       P C +        +P+C   G E    +  R VSF+D PGH+ LM TML GA++MDGA+L+IAANE
Sbjct:    8 RQAEVNIGMVGHVDHGKTTLTKALTGIWTDTHSEELRRGITIKIGFADAEIRKC-------PSCGR-----YSTSPICPYCGHET---EFERRVSFIDAPGHEALMTTMLAGASLMDGAVLVIAANE 119          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_NATPD (Translation initiation factor 2 subunit gamma OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCED-DRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            RQ  +NIG +GHV HGK+T+V+++SG  T +   E++R I+I+LGYA+A   +C + D   R    +    G E   L              R VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE  PR Q
Sbjct:    6 RQPEVNIGLVGHVDHGKTTLVESLSGEWTDQHSEEMKRGISIRLGYADATFRECPELDEPDRYTVEETCPDGSESEHL--------------RTVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEPVPRAQ 125          
The following BLAST results are available for this feature:
BLAST of FC920229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IF2G_THEVO8.337e-2749.24Translation initiation factor 2 subunit gamma OS=T... [more]
IF2G_METJA8.337e-2747.79Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_HALSA2.426e-2645.86Translation initiation factor 2 subunit gamma OS=H... [more]
IF2G_HALS32.426e-2645.86Translation initiation factor 2 subunit gamma OS=H... [more]
SUV39_DROPS1.572e-2578.21Histone-lysine N-methyltransferase Su(var)3-9 OS=D... [more]
IF2G_METKA4.575e-2549.62Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_META35.975e-2544.36Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_PYRKO7.803e-2548.82Translation initiation factor 2 subunit gamma OS=P... [more]
IF2G_THEON1.019e-2448.03Translation initiation factor 2 subunit gamma OS=T... [more]
IF2G_NATPD3.873e-2447.01Translation initiation factor 2 subunit gamma OS=N... [more]

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Properties
Property NameValue
Genbank descriptionC32005F04EF RVDevelop1 Citrus clementina cDNA clone C32005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920229 ID=FC920229; Name=FC920229; organism=Citrus clementina; type=EST; length=696bp
GGATCGCAAGAAGTCCCCCAAAACCTAAAATTCTCTCTCACACACACACC
CTCTCACAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCTCGCAG
TCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTTG
AACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAGA
AACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAGT
TGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCAG
GCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAAC
TGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAAT
TAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATAC
AAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATGG
AAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAACT
GCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCAT
GATATTCTTATGGCTACNATGCTTAATGGAGCAGCAATTATGGATGGAGC
ATTGCTTCTCATAGCAGCCAATGAAAGNTGCCCCCGCACACAACAT
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