FC920229

Overview
NameFC920229
Unique NameFC920229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_THEAC (Translation initiation factor 2 subunit gamma OS=Thermoplasma acidophilum GN=eif2g PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 60/132 (45.45%), Postives = 82/132 (62.12%), Query Frame = 1
Query:  298 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            Q ++NIG +GHV HGKST+  A++G +T     E++R I+IKLGYA+  IY+C D                  N        ENC ++  R +S VD PGH+ LMATML+G+A+M+GALL+IAANE CP+ Q
Sbjct:    9 QPSVNIGMVGHVDHGKSTLTLALTGTKTDTHSEEIKRGISIKLGYADTPIYRCYD---------------SSGNVHYTREKGENCDLE--RVISIVDAPGHETLMATMLSGSALMNGALLVIAANEHCPQPQ 123          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_HALMA (Translation initiation factor 2 subunit gamma OS=Haloarcula marismortui GN=eif2g PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            ++Q  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A   +C +   P       +         CD    +      LR VSFVD PGH+ LMATML+GAAIMDGA+L+I+A E  P+ Q
Sbjct:    4 NKQPEVNIGLVGHVDHGKTTLVQALSGEWTDQHSEEMKRGISIRLGYADATFRRCPEAEEPEAFTVDEH---------CDDHDVDTDH---LRTVSFVDAPGHETLMATMLSGAAIMDGAVLVISATEPVPQAQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_HALLT (Translation initiation factor 2 subunit gamma OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 59/138 (42.75%), Postives = 84/138 (60.87%), Query Frame = 1
Query:  289 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCY---KAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            ++ Q  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A   +C       P CY   +    G E  P              +R VSFVD PGH+ LMATML+GA+IMDGA+L+++A E  P+ Q
Sbjct:    4 VNTQPEVNIGLVGHVDHGKTTLVQALSGSWTDQHSEEMKRGISIRLGYADATFRRCPG--VDAPECYTVDEECEDGSESEP--------------IRTVSFVDAPGHETLMATMLSGASIMDGAVLVVSATEDVPQAQ 125          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_HALWD (Translation initiation factor 2 subunit gamma OS=Haloquadratum walsbyi (strain DSM 16790) GN=eIF2G PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 58/134 (43.28%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            ++Q  +NIG +GHV HGK+T+V+A+SG  T +   E++R I+I+LGYA+A      +   P    Y    +G +  P            + LR VSFVD PGH+ LMATML+GAAIMDGA+L+++A E  P+ Q
Sbjct:    5 TQQPEVNIGLVGHVDHGKTTLVQALSGSWTDQHSEEMKRGISIRLGYADATFRMISNINPPEG--YTVDETGPDGEPT-----------ETLRTVSFVDAPGHETLMATMLSGAAIMDGAVLVVSATEDVPQAQ 125          
The following BLAST results are available for this feature:
BLAST of FC920229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IF2G_THEAC5.058e-2445.45Translation initiation factor 2 subunit gamma OS=T... [more]
IF2G_HALMA4.282e-2344.03Translation initiation factor 2 subunit gamma OS=H... [more]
IF2G_HALLT4.282e-2342.75Translation initiation factor 2 subunit gamma OS=H... [more]
IF2G_HALWD3.625e-2243.28Translation initiation factor 2 subunit gamma OS=H... [more]

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Properties
Property NameValue
Genbank descriptionC32005F04EF RVDevelop1 Citrus clementina cDNA clone C32005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920229 ID=FC920229; Name=FC920229; organism=Citrus clementina; type=EST; length=696bp
GGATCGCAAGAAGTCCCCCAAAACCTAAAATTCTCTCTCACACACACACC
CTCTCACAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCTCGCAG
TCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTTG
AACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAGA
AACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAGT
TGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCAG
GCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAAC
TGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAAT
TAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATAC
AAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATGG
AAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAACT
GCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCAT
GATATTCTTATGGCTACNATGCTTAATGGAGCAGCAATTATGGATGGAGC
ATTGCTTCTCATAGCAGCCAATGAAAGNTGCCCCCGCACACAACAT
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