FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_NEIG2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain NCCP11945) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++++A +LA  YL+ +    P L  +I +  +  L EA++ D++I +  N   L GV V  KD  C     S   S++L+N+  P+ AT V+ + +   + +G+TN+DEF MGST E+S +    NPW+   VP             R    +LGSDTG
Sbjct:   16 KQISAVELASAYLAAIAEKNPALNGYITIDQDKTLAEARAADERIAQG-NASALTGVPVAYKDIFCQTGWRSACASKMLDNFVSPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORA1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella avium (strain 197N) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.394e-20
Identity = 58/159 (36.48%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R V+A +LAE+ L+  + A   L +F+H+   + L +A++ D  +      GPLAG+ +  KD   T    STAGS++L +Y  PFDAT V++++    + +GK N DEF MGS  E+S+F    NPWD++ VP             R    + G+DTG
Sbjct:   23 RRVSAVELAESGLAAAQAAAG-LNAFLHIDPELTLVQARAADAALAAG-TAGPLAGIPIAHKDAFVTRGWRSTAGSKMLRDYLSPFDATVVERLQAAGAVSLGKLNCDEFAMGSGNENSAFGPARNPWDLAAVPGGSSGGSAAAVAARLVAGATGTDTG 179          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_THIDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 56/159 (35.22%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++V++ +LA+ YL R+    P + +FI V     L EA + D  I      GPL GV +  KD  CT    +T GS++L N+  P+DA  +++ K      +GKTN+DEF MGS+ E+S F    NPW+   VP             R    + G+DTG
Sbjct:   16 KQVSSRELAQQYLDRIAALNPTINAFITVDPEKTLAEAAAADALIAGGA-AGPLTGVPIAHKDIFCTDGWLTTCGSKMLANFVAPYDAHVIERCKAAGMPSLGKTNMDEFAMGSSNETSFFGAVKNPWNAGYVPGGSSGGAAACVAARMAPAATGTDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_NEIG1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++++A +LA  YL+ +    P L  +I +  +  L EA++ D++I +  N   L GV V  KD  C     S   S++L+N+  P+ AT V+ + +   + +G+TN+DEF MGST E+S +    NPW+   VP             R    +LGSDTG
Sbjct:   16 KQISAVELASAYLAAIAEKNPALNGYITIDQDKTLAEARAADERIAQG-NASALTGVPVAYKDIFCQTGWRSACASKMLDNFIFPYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLL2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 53/158 (33.54%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R +T  ++   YL R+                 +++A+ +D K+      G L G+ + +KDNI       T  SR+LENY   +DATAV++++  D + +GKTN+DEF MGS+ E+S+F    NP+D +RVP                + +LGSDTG
Sbjct:   16 RRITCEKVVLDYLERIDRHRDDNIYITVFHEQAVEKARKLDKKLSEGGLPGKLFGMPMAIKDNISIKGAGLTCASRILENYESVYDATAVQRLEAEDAVFLGKTNMDEFAMGSSNENSAFGAVPNPFDKTRVPGGSSGGSAAAVAAGLALAALGSDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_STAAU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 49/159 (30.82%), Postives = 91/159 (57.23%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +++  + + +     ++  +P +KSF+ +   N +K+AQ +D+   +++  G L G+ +G+KDNI T  + +T  S++LE + P +++T ++K+   + +++GK N+DEF MG +TE+S  + T NP+D   VP                  SLGSDTG
Sbjct:   18 KKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSISKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_NEIM0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C (strain 053442) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 52/159 (32.70%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++++A +LA  YL+ +    P L  +I +  +  L EA++ D++I +  N   L G+ V  KD  C     S   S++L+N+   + AT V+ + +   + +G+TN+DEF MGST E+S +  T NPW+   VP             R    +LGSDTG
Sbjct:   16 KQISAVELASAYLAAIAEKNPALNGYITIDQDKTLAEARAADERIAQG-NASALTGIPVAYKDIFCQTGWRSACASKMLDNFISSYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGATKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + T  ++ ++YL R+                 L  A+S+D +       G L G+ + +KDNI       T  SR+LENY   +DAT ++++   D + +GKTN+DEF MGS+ E+S+F   ANP+D +RVP                +V+LGSDTG
Sbjct:   17 QTTCEEVTKSYLERIDRHCDDNIFLAVFHEQALSRARSLDRRFSEGGTPGLLFGMPMAIKDNISIKGARLTCASRILENYESVYDATVIERLLNEDAVFIGKTNMDEFAMGSSNENSAFGPVANPFDKTRVPGGSSGGSAAAVAAGLALVALGSDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.495e-20
Identity = 55/158 (34.81%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R+V+A +LA + L   + A   L +F+H+  ++        D        GPLAGV +  KD   T    +TAGS++LE Y  PFDAT V++++    + +GK N DEF MGS  E+S++    NPWD + VP             R    + G+DTG
Sbjct:   23 RQVSARELARSALDAAQAAG-DLNTFLHIDPDLTLAQADAADAALAAGTAGPLAGVPIAHKDAFVTRGWRTTAGSKMLEGYASPFDATVVQRLQAAGAVSLGKLNCDEFAMGSANENSAYGPVRNPWDPNAVPGGSSGGSAAAVAARLVAAATGTDTG 179          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORPE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella pertussis GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 56/159 (35.22%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R+V+A +LA++ L   + A   L +F+H+  ++ L +A++ D  +      GPLAG+ +  KD   T    +TAGS++L  Y  PFDAT V+++ E   + +GK N DEF MGS  E+S++    NPWD   VP             R    + G+DTG
Sbjct:   23 RQVSAVELAQSGLDAAQAASG-LNAFLHIDPDLTLAQARAADAALAAG-TAGPLAGIPIAHKDAFVTRGWRTTAGSKMLAGYASPFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTQAVPGGSSGGSAAAVAARLVAAATGTDTG 179          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_NEIG22.576e-2033.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_BORA14.394e-2036.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_THIDA5.738e-2035.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_NEIG15.738e-2033.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_CHLL25.738e-2033.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_STAAU7.495e-2030.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_NEIM07.495e-2032.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_CHLPD7.495e-2033.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BORPD7.495e-2034.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BORPE9.788e-2035.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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