FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ALHEH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.788e-20
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E ++ ++ E +L+R+    P   + I  +    L  A + D +I   E  GPL GV +  KD  CT  + ++ GSR+L+N+  P+DAT V K+ +   +++GK N+DEF MGS+ E+S +    NPWD+  VP             R    + G+DTG
Sbjct:   17 EFSSREVTEAFLARIDALNPVTNAVITPTPEQALAAADAADQRIAAGE-AGPLTGVPLVHKDIFCTQGVRTSCGSRMLDNFTAPYDATVVGKLADAGMVMLGKANMDEFAMGSSNETSYYGPVKNPWDLDAVPGGSSGGSAAAVAGRLAPAATGTDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella parapertussis GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 56/159 (35.22%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R+V+A +LA++ L   + A   L +F+H+  ++ L +A++ D  +      GPLAG+ +  KD   T    +TAGS++L  Y  PFDAT V+++ E   + +GK N DEF MGS  E+S++    NPWD   VP             R    + G+DTG
Sbjct:   23 RQVSAVELAQSGLDAAQAASG-LNAFLHIDPDLTLAQARAADAALAAG-TAGPLAGIPIAHKDAFVTRGWRTTAGSKMLAGYASPFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTRAVPGGSSGGSAAAVAARLVAAATGTDTG 179          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: QRSL1_MOUSE (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Mus musculus GN=Qrsl1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 51/131 (38.93%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            +VT T+L +  LS +K  +  L ++I VS  V LK+A+  + + K+ +++G L G+ V VKDN  T  + +T  S +L+ Y PP++AT V+K+ +   +++GKTNLDEF MGS +    F    NPW  S+
Sbjct:   17 QVTPTELCKNCLSLIKKTK-YLNAYITVSEEVALKQAEESEKRYKQGQSLGDLDGIPVAVKDNFSTTGIETTCASNMLKGYVPPYNATVVQKLLDQGALLMGKTNLDEFAMGSGSTDGVFGPVRNPWTYSK 146          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORBR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella bronchiseptica GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 56/159 (35.22%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R+V+A +LA++ L   + A   L +F+H+   + L +A++ D  +      GPLAG+ +  KD   T    +TAGS++L  Y  PFDAT V+++ E   + +GK N DEF MGS  E+S++    NPWD   VP             R    + G+DTG
Sbjct:   23 RQVSAVELAQSGLDAAQAASG-LNAFLHIDPELTLAQARAADAALAAG-TAGPLAGIPIAHKDAFVTRGWRTTAGSKMLAGYASPFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTRAVPGGSSGGSAAAVAARLVAAATGTDTG 179          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_NITEC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosomonas eutropha (strain C91) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +++++T+L   +L+R+K   P L +FI +     L +A++ D+ I   ++   L G+ +  KD  C     +T GS++L N+  P+DAT VK+  +   + +GKTN+DEF MGS+ E+S +    NPWD   VP             R    + G+DTG
Sbjct:   16 KKISSTELTGEFLARIKALNPDLNAFITMDEEKSLDQARTADEMIATGQST-LLTGIPIAQKDIFCANGWLTTCGSKMLSNFISPYDATVVKQFDQVGMVNLGKTNMDEFAMGSSNETSYYGPVKNPWDRLAVPGGSSGGSACAVAARLAPAATGTDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.181e-19
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  372 GPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            GPL+GV V VKDNI T  + +T  S++L+ Y PP+DA  V  +K     +VGKTN+DEFGMG+TTE+S++  T NP D  RVP                  ++GSDTG
Sbjct:   27 GPLSGVTVAVKDNISTKGIETTCASKILKGYIPPYDAHVVTLLKNAGAAIVGKTNMDEFGMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTG 134          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_VESOH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.848e-19
Identity = 52/159 (32.70%), Postives = 90/159 (56.60%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +  +L + YLSR+   + +L +FI V++ + L +AQ  DDKI    N   L G+    KD  CT  + ++AGS++L+ +  P+DAT  +K+ + + +++GKTN+DEF MGS+ E+S +    NPW+  ++P                  + G+DTG
Sbjct:   16 KDFSCVELTQYYLSRIN--QSKLNAFITVTDELALVQAQVADDKIALG-NASILTGIPYAHKDIFCTKGVKTSAGSKMLDTFIAPYDATVSQKLNQMNLVMLGKTNMDEFAMGSSNENSFYNAVKNPWNYLKIPGGSSGGSAASVAGGLSCFATGTDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHOFD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNEN--VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R+V+A + A+ +L+R + A   L +F+  +  V L++A++ D  +  +       L GV +  KD   T D  STAGSR+L  YR PFDAT V K+     + +GK N DEF MGS  E+S+F    NPWD++R P             R    + G+DTG
Sbjct:   22 RKVSALETAQHFLARAQ-ANASLGAFLDFNEEVTLRQARAADLALAADSGGATPTLLGVPMAHKDIFVTRDFISTAGSRMLAGYRSPFDATVVSKLAAQGVVTLGKLNCDEFAMGSANENSAFGPVRNPWDLTRTPGGSSGGSAAAVAARLLPAATGTDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SALRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinibacter ruber (strain DSM 13855) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E +   L  ++L R+   + ++ +F  V  +  L  A+ +D + +R  N  PLAG+++ VKDNIC    P + GS++L ++   +DAT + ++++   I +GKTN DEF MGS+ E+S F    NP     VP               C  +LGSDTG
Sbjct:   17 ETSCEALVSSFLERIDARDNEINAFTSVDQDGALNHARYLDSQRERG-NPRPLAGLVLAVKDNICIRGYPVSCGSKMLADFSSLYDATVIDRLRDAGAIFIGKTNCDEFAMGSSNETSHFGPVRNPHAPEYVPGGSSGGSAAAVAAGLCHAALGSDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PSYCK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter cryohalolentis (strain K5) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 53/159 (33.33%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFI-HVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ ++ +L + Y+ R+   + ++ SFI H S     +A++ D+   + +   PL GV +  KD  CT  + +T GS++L N+  P+DAT V  + +   I +GK N+DEF MGS  ESS +    NPW+I+ VP                 V+ GSDTG
Sbjct:   19 KQFSSLELTDHYIKRINALDSKINSFITHTSETARAQAKAADEMRVQGDK-RPLLGVPMAHKDIFCTQGVLTTCGSKMLHNFISPYDATIVTNIDKAGMISLGKLNMDEFAMGSDNESSYYGAVHNPWNIAHVPGGSSGGSAAAVAAGFVPVATGSDTG 176          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ALHEH9.788e-2033.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_BORPA1.278e-1935.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
QRSL1_MOUSE1.670e-1938.93Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_BORBR1.670e-1935.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_NITEC2.181e-1932.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METHJ2.181e-1945.37Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_VESOH2.848e-1932.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=V... [more]
GATA_RHOFD3.720e-1936.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_SALRD4.858e-1933.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSYCK4.858e-1933.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
back to top