FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: QRSL1_MACFA (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Macaca fascicularis GN=QRSL1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 50/131 (38.17%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            ++T T+L +  LS +K  +  L ++I VS  V LK+A+  + + K  +++G L G+ V VKDN  T  + +T  S +L+ Y PP++AT V+K+ +   +++GKTNLDEF MGS +    F    NPW  S+
Sbjct:   17 QITPTELCQKCLSLIKKTK-FLNAYITVSEEVALKQAEESEKRYKNGQSLGDLDGIPVAVKDNFSTSGIETTCASNMLKGYIPPYNATVVQKLLDQGALLMGKTNLDEFAMGSGSTDGIFGPVKNPWSYSK 146          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SILPO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Silicibacter pomeroyi GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 49/163 (30.06%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E T+  L E  L+ ++ A   L +F+H +  + L+ A++ D++++  E    + G+ +G+KD  CT  +PS A SR+LE ++P +++T  +++ +   +++GK N+DEF MGS+ E+S +    NPW     D +  P               C+ + G+DTG
Sbjct:   20 ETTSVALTEACLAAIEGAGA-LNAFVHKTPELALERAKAADERLQGREEAPKMCGLPIGIKDLFCTKGVPSQAASRILEGFKPEYESTVSQQLADAGAVMLGKLNMDEFAMGSSNETSCYGNAVNPWRRGNDDAALTPGGSSGGSAAAVAADLCLAATGTDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RUTMC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ruthia magnifica subsp. Calyptogena magnifica GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 52/159 (32.70%), Postives = 90/159 (56.60%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +  +L + YL+R+  ++  L +FI V++ + L +AQ  DDKI    N   L G+    KD  CT  + ++AGSR+L+ +  P+DAT  +K+ + + +++GKTN+DEF MGS+ E+S +    NPW+  ++P                  + G+DTG
Sbjct:   16 KDFSCVELTQYYLNRIDQSD--LNAFITVTDELALAQAQVADDKIASG-NANILTGIPYAHKDIFCTKGVKTSAGSRMLDTFVSPYDATVSQKLNQVNLVMLGKTNMDEFAMGSSNENSFYGAVKNPWNYLKIPGGSSGGSAASVAGGLSCFATGTDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PSYA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFI-HVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ ++ +L + Y+ R+   + ++ SFI H S     +A++ D+   + +   PL GV +  KD  CT  + +T GS++L N+  P+DAT V  + +   I +GK N+DEF MGS  ESS +    NPW+I  VP                 V+ GSDTG
Sbjct:   19 KQFSSLELTDHYIKRINALDSKINSFITHTSETARTQAKAADEMRVQGDK-RPLLGVPMAHKDIFCTQGVLTTCGSKMLHNFISPYDATIVTNIDKAGMISLGKLNMDEFAMGSDNESSYYGAVHNPWNIGHVPGGSSGGSAAAVAAGFVPVATGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_OCEIH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Oceanobacillus iheyensis GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 51/160 (31.87%), Postives = 90/160 (56.25%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPP-FDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E+T   L +    R+   + ++ +F+ +     L++A+ +D   +  +  G L G+  G+KDNI T  + +T  S+ L+N+  P +DAT V+K+++ + + VGK N+DEF MGS+ E+S ++ T NPW+   VP              + + +LGSDTG
Sbjct:   18 KEITVEDLVKESYQRIHEVDQEVHAFLTLDEEKALEKARELD---QLEDKTGILFGMPGGIKDNIVTKGLRTTCASQFLDNFNDPLYDATVVQKLQKENMVAVGKLNMDEFAMGSSNENSGYEPTRNPWNTEHVPGGSSGGSAAAVAAGEVLFTLGSDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_NITMU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gatA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 51/159 (32.08%), Postives = 80/159 (50.31%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R++++ +L   +L R +   P+  +FI +     L +AQ+ D  I       PL GV +  KD  CT    +T GS++L N+  P+DA  + +      + +GKTN+DEF MGS+ E+S +    NPWD + VP             R    + G+DTG
Sbjct:   16 RKISSVELTSEFLKRSRALNPEYNAFITLDERTSLAQAQAADILIGSGRGQ-PLTGVPIAQKDIFCTKGWLTTCGSKMLSNFISPYDAHVIGRFNAVGAVNIGKTNMDEFAMGSSNETSFYGPVKNPWDTAAVPGGSSGGSACAVAARMAPAATGTDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_EHRRW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia ruminantium (strain Welgevonden) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 55/164 (33.54%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNEN--VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A +L +T++  +     QL +FI  +  V  +A    D I  +E   + PL G+ VG+KD  CT ++ +TA S +L N+ P +D+T VK++ +   +++GK N+DEF MGS+  +S F    NPW     +  VP               C  +LGSDTG
Sbjct:   19 KEFSAVELTQTHIDAIN--NEQLNAFITKTPEVALDAARKADHILIHEQDKITPLTGIPVGIKDLFCTKNIKTTACSNILRNFTPQYDSTVVKRLIDDGAVMLGKLNMDEFAMGSSNSNSCFGPVENPWTRADGVKVVPGGSSGGSSAAVAGFLCAGALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ANAPZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaplasma phagocytophilum (strain HZ) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 49/163 (30.06%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E + T+L E Y+  ++     L +F+  + ++ L++A+ +++ + + E + PLAG+ +GVKD  CT  + +TA S +L+N+ P +++T  + +   +  ++GK N+DEF MGS +  S F    NPW        +P             R C+ ++GSDTG
Sbjct:   20 KEFSPTELVEAYIDEME--NENLNAFVTKTQDIALEQARKVENLLLQGEKISPLAGMPIGVKDLFCTAGVRTTACSDILKNFVPSYESTISQNLWNNNACMMGKLNMDEFAMGSASSYSCFGPVKNPWKGPYGEDLIPGGSSGGSSAAVAGRLCIAAIGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: QRSL1_HUMAN (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Homo sapiens GN=QRSL1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            ++T T+L +  LS +K  +  L ++I VS  V LK+A+  + + K  +++G L G+ + VKDN  T  + +T  S +L+ Y PP++AT V+K+ +   +++GKTNLDEF MGS +    F    NPW  S+
Sbjct:   17 QITPTELCQKCLSLIKKTK-FLNAYITVSEEVALKQAEESEKRYKNGQSLGDLDGIPIAVKDNFSTSGIETTCASNMLKGYIPPYNATVVQKLLDQGALLMGKTNLDEFAMGSGSTDGVFGPVKNPWSYSK 146          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: QRSL1_BOVIN (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Bos taurus GN=QRSL1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            ++T T+L +  LS +K  +  L ++I VS  V LK+A+  + + K+  ++G L G+ + VKDN  T  + +T  S +L+ Y PP++AT V+K+ +   +++GKTNLDEF MGS +    F    NPW  S+
Sbjct:   17 QITPTELCQRCLSLIKKTK-FLNAYITVSEEVALKQAEESEKRYKKGHSLGDLDGIPIAVKDNFSTSGIETTCASNMLKGYVPPYNATVVQKLLDQGALLMGKTNLDEFAMGSGSTDGIFGPVKNPWSYSK 146          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
QRSL1_MACFA6.345e-1938.17Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_SILPO6.345e-1930.06Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RUTMC6.345e-1932.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PSYA26.345e-1933.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_OCEIH6.345e-1931.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_NITMU6.345e-1932.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_EHRRW6.345e-1933.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_ANAPZ6.345e-1930.06Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
QRSL1_HUMAN8.286e-1937.40Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
QRSL1_BOVIN8.286e-1937.40Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
back to top