FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_MARAV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  228 VTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDIS----RVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +++ +L + +L RLK  + +  SFI +S+   L EA++ D+ ++         GV    KD  CT  + ++ GS++L+N+ PP+DAT     K    + +GKTN+DEF MGS+ ESS +    NPW +S    RVP             R    + G+DTG
Sbjct:   18 ISSVELTQQFLDRLKTEDGKYNSFITISDEQALAEARAADE-MRAAGKATVWTGVPFAHKDIFCTSGIRTSCGSKMLDNFVPPYDATVTANFKAAGAVCLGKTNMDEFAMGSSNESSFYGAVTNPWGLSGGDKRVPGGSSGGSAAAVAARLVPAATGTDTG 177          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_MACCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Macrococcus caseolyticus (strain JCSC5402) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 52/159 (32.70%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + +  ++L E     ++  +  + SF+ +     L++A+++D++       G L G+ +G+KDNI T D+ +T  S++LE +   +DAT + K+   +GI+VGK N+DEF MG +TE+S ++ T NP+D   VP                  SLGSDTG
Sbjct:   18 KTIRPSELIEDTFVNIEKDDTVINSFLALDKEAALEKAKTMDNETPS----GKLFGIPMGIKDNIVTKDVETTCASKILEGFNSVYDATVMNKLNAENGILVGKLNMDEFAMGGSTENSFYKKTVNPFDHKAVPGGSSGGSAAAVAASLVPFSLGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BRAHW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 50/162 (30.86%), Postives = 92/162 (56.79%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLK---LAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E+ A  L ++ +  ++     + ++ +++ +     L++A+   ++I   E++ PL GV + +KDN+C  D   TA S++LE Y+ P+ A  V+++ +   I++G+TN+DEF MG TTE+S++ VT NP + + VP                  +LGSDTG
Sbjct:   18 KEIDAPTLVDSIIKNIEEDNKRDDKIYAYLEIFKEEALEQAKKAQERINNGEDL-PLLGVPLAIKDNLCYKDHLMTASSKMLEGYKAPYTAPTVQRLIDNGAIIIGRTNMDEFAMGGTTETSNYGVTRNPKNRAHVPGGSSGGSAAAVAANFAFGALGSDTG 178          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: QRSL1_RAT (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Rattus norvegicus GN=Qrsl1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.413e-18
Identity = 49/130 (37.69%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  228 VTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            +T T+L +  LS +K  +  L ++I VS  V LK+A+  + + K+ +++G L G+ V VKDN  T  + +T  S +L+ Y PP++AT V+++ +   +++GKTNLDEF MGS +    F    NPW  S+
Sbjct:   18 ITPTELCKKCLSLIKKTK-YLNAYITVSEEVALKQAEESEKRYKQGQSLGDLDGIPVAVKDNFSTSGIETTCASNMLKGYLPPYNATVVQRLLDQGALLMGKTNLDEFAMGSGSTDGVFGPVKNPWTYSK 146          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_AZOVD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 52/159 (32.70%), Postives = 87/159 (54.72%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E ++ +L+E  L+R+   +P L SFI V+    L++A++ D +    E+ G L G  +  KD  CT  + ++  S++L+++  P+DAT V+++     + +GK N+DEF MGS +ESS +    NPW+   VP             R    + GSDTG
Sbjct:   16 KEFSSVELSEALLARIAELDPGLNSFITVTAEQALEQARAADARRAAGES-GALLGAPIAHKDLFCTKGVRTSCASKILDDFIAPYDATVVERLAAAGCVSLGKLNMDEFAMGSASESSHYGPVRNPWNTECVPGGSSGGSAAAVAARLVPAATGSDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ACIC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  345 DKIKRNENVG-PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            D + R E    P+ GV  G+KD +    MP+TA S++LE YRPP+ ATAV+++ +   ++VGK N DEF MGS+ E+S++    NP  + RVP                V +LG+DTG
Sbjct:   57 DALSREERAKLPMGGVPFGIKDVLTVEGMPATASSKILEGYRPPYTATAVQRLIDAGAVLVGKLNCDEFAMGSSNENSAYGPVKNPRALDRVPGGSSGGSAAAVAANMAVATLGTDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_JANSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Jannaschia sp. (strain CCS1) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.149e-18
Identity = 51/163 (31.29%), Postives = 90/163 (55.21%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            EVT+  L +  LS +  A+  L +F+H + ++ L+ A++ D +I   +    + G+ VG+KD  CT  +PS A SR+L+ ++P +++T   K+++   +++GK N+DEF MGS+ E+S +    NPW     D +  P               C+ + G+DTG
Sbjct:   20 EVTSVDLTQACLSAIDQADA-LGTFVHKTPDLALERAKAADARIAEGD-APDMCGIPVGIKDLFCTEGVPSQAASRILDGFKPEYESTVSGKLRDAGAVMLGKLNMDEFAMGSSNETSVYGNAVNPWRAGNSDAALTPGGSSGGSASAVAGDLCLAATGTDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: QRSL1_XENLA (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Xenopus laevis GN=qrsl1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 48/131 (36.64%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            +V  T+L +  LS +K     L ++I ++ ++ LK+A   D +  + + +G L G+ + +KDN  T  + +T  SR+L+ Y  P++AT V+K+ +   +++GKTNLDEFGMGS +  S F    NPW  SR
Sbjct:   17 QVKPTELCQKCLSLIKETS-FLNAYITITEDIALKQAAEADKRFAQGKPLGELDGIPIAIKDNFSTAGIETTCASRMLKGYVAPYNATVVQKLFDQGAVLMGKTNLDEFGMGSGSTDSIFGPVRNPWSYSR 146          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_TERTT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 48/159 (30.19%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E ++ ++   +L R+K  +P    ++ V+  + + +A++ D ++    N   + GV    KD  CT  + +T GS++L+N+ PP++AT V+       +++GKTN+DEF MGS+ E+S F    NPWD + VP             R    +  +DTG
Sbjct:   16 KEFSSEEITRYFLDRIKQQDPTYNCYVTVTEELAMAQAKAADARLAAG-NAPTMCGVPFAHKDIFCTNGVKTTCGSKMLDNFVPPYNATVVENYINEGAVMLGKTNMDEFAMGSSNETSYFGPVKNPWDTNCVPGGSSGGSAAAVAARMAPGATATDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanocaldococcus jannaschii GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.112e-18
Identity = 55/152 (36.18%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  249 ETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSI--DDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E YL R++     + + I V    VL+EA+ +  D+K K+     PL G ++ VK NI       +  S+ LENY  P+DAT ++K+KE  G+++G  N+DEF  GS+ E+S F  T NP    R+P               C ++LGSDTG
Sbjct:    7 EEYLDRIEKINKDINALIEVKPEKVLEEAKKLEKDEKAKKK----PLYGKIIVVKANINVEGYTISCASKTLENYIAPYDATVIEKIKENGGLIIGIANMDEFACGSSGETSYFGPTKNPRAKDRIPGGSSSGSAAAVSADLCDMALGSDTG 154          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_MARAV8.286e-1933.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MACCJ8.286e-1932.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BRAHW8.286e-1930.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
QRSL1_RAT1.413e-1837.69Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_AZOVD1.846e-1832.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIC51.846e-1839.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_JANSC3.149e-1831.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=J... [more]
QRSL1_XENLA4.112e-1836.64Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_TERTT4.112e-1830.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_METJA4.112e-1836.18Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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