FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLT3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.015e-18
Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++V+   +   YL+R++  + +L +FI V     L  A+++D K+      G L G+ + +K+NI       T GS++L  +   +DATA+KK+   D + +G  N+DEF MGS+TE+S F  T N  D ++VP                +V+LGSDTG
Sbjct:   19 KKVSCEAVTAAYLNRIE-EKKELNAFIAVFKETALARAKALDAKLADGNAPGKLFGLPMAIKNNIAIEGERLTCGSKILSKFNSIYDATAIKKLLAEDAVFLGSANMDEFAMGSSTETSYFGATKNSVDPTKVPGGSSGGSAVAVASDCALVALGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_GRABC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 46/163 (28.22%), Postives = 84/163 (51.53%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +  +A +L + +L  ++   P+L ++I V+ +  +   +  D++  +   G L G+ V  KD  C+  + +TAGSR+LEN+ PP+++   +++     +++GK NLDEF MGS   +S++    NPW     D   VP                + + G+DTG
Sbjct:   19 KRFSARELTDAHLGAIEALNPRLNAYITVTPDQARAQAAAADRVLASGEAGALTGIPVASKDMFCSEGIRTTAGSRILENFVPPYESAVTERMLRDGAVILGKANLDEFAMGSANLTSAYGPVENPWKRHDDDAVLVPGGSSGGSAAAVAAHLALGATGTDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_EHRCR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia chaffeensis (strain Arkansas) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.162e-18
Identity = 53/164 (32.32%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKI--KRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE +A +L + ++  +     +L +FI  +  +   A    D I   + EN+ PL G+ VG+KD  CT  + +TA S +L+N+ P +D+T  K++ +   +++GK N+DEF MGS+  +S F    NPW     +  VP               C  +LGSDTG
Sbjct:   19 REFSAVELTKLHIEAVN--NEKLNAFITKTPEIALSAAEKADYIFTHQKENLTPLTGIPVGIKDLFCTKHVRTTACSNILKNFTPQYDSTVTKRLLDNGAVMLGKLNMDEFAMGSSNSNSCFGHVKNPWVRADGVEVVPGGSSGGSSAAVAGFLCAGALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SACD2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 48/159 (30.19%), Postives = 86/159 (54.09%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +  ++ ++ + +L+R+K  + +  SFI ++    L +A + D ++   +    L GV +  KD  CT  + ++ GS++L+N+ PP+DAT V    +   +++GKTN+DEF MGS+ E+S +    NPWD + VP             R    +  +DTG
Sbjct:   16 KSFSSVEITQHFLNRIKTLDTEYNSFITLTEEQALAQATAADARLAAGD-APALCGVPLAHKDIFCTNGVRTSCGSKMLDNFVPPYDATVVTNYSQDGVVILGKTNMDEFAMGSSNETSYYGPVKNPWDTNCVPGGSSGGSAAAVAARLVPGATATDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ORITB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Orientia tsutsugamushi (strain Boryong) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 52/163 (31.90%), Postives = 82/163 (50.31%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E TAT L   +++++      + S+I     +  +A    D + +N    P+ G+ V +KD  CT  + +TA S++L+N+ P +DATA  K+    GI++GK N+DEF MGS   +S F    NPW     D+   P                + +LGSDTG
Sbjct:   19 KEFTATDLVTAHINQMDKYR-YINSYITEIPELALQAAKKSDFLIQNNQARPIEGIPVSIKDLFCTKGILTTAASKMLQNFTPVYDATAYSKIINAGGIMLGKGNMDEFAMGSANINSYFGNVINPWKAESDDVDLTPGGSSGGSSAAVAAFMAMAALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_AKKM8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.197e-17
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  375 PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            PLAG+ + VKDNI  +  P+   SR+L  Y  P+DAT+++ +KE  GI +G+TN+DEF MG++ E+S++ +T NP    R+P                + +LGSDTG
Sbjct:   62 PLAGIPIAVKDNINVLGQPTRCASRLLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFAMGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIAALGSDTG 168          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_EHRRG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia ruminantium (strain Gardel) GN=gatA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 53/164 (32.32%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNEN--VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A +L + ++  +     QL +FI  +  V   A    D I  +E   +  L G+ VG+KD  CT ++ +TA S +L N+ P +D+T VK++ +   +++GK N+DEF MGS+  +S F    NPW     +  VP               C  +LGSDTG
Sbjct:   19 KEFSAVELTQAHIDAIN--NEQLNAFITKTPEVALNAARKADHILTHEQDKITSLTGIPVGIKDLFCTKNIKTTACSNILRNFTPQYDSTVVKRLIDDGAVMLGKLNMDEFAMGSSNSNSCFGPVENPWTRADGVKVVPGGSSGGSSAAVAGFLCAGALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DICDI (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Dictyostelium discoideum GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  270 KLAEPQLKSFIHVSNNVLKEAQSIDDKIKR------NENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----------------DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            K++   L +FI      L++ +S+  +IK       N     L G+ +GVKDN  + +  +T GS++LENY P FD+T VK +KE   I++GKTN+DEF MGS++ S  F    NPW                 ++  V                CV S+GSDTG
Sbjct:   34 KVSPNHLNTFIS-----LQDEKSLGKQIKESQERYDNGTNKRLDGIPIGVKDNFSSKNFKTTCGSKILENYIPSFDSTVVKLLKEEGAIIIGKTNMDEFSMGSSSTSGHFGKVINPWSKPNNNNNNDNDNNNNGEVLYVAGGSSGGSAAAVASNYCVASIGSDTG 193          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHRVO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromobacterium violaceum GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 48/159 (30.19%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++V++ +LA  YL R++   PQL + + V     L EA++ D ++   +    L GV +  KD  C     ++ GSR+L+N+  P+ A  V++      + +G+ N+DEF MGS+ E+S +    NPWD++ +P             R   V+  +DTG
Sbjct:   16 KQVSSVELASQYLDRIEALNPQLNAIVTVDREKTLAEARAADARLAAGD-ARALTGVPLVHKDLFCQQGWKTSCGSRMLDNFVSPYSAHVVEQCAAAGMVTLGRANMDEFAMGSSNENSFYGAVKNPWDLNAIPGGSSGGSAAAVAARLAPVATATDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BARQU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bartonella quintana GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.041e-17
Identity = 50/164 (30.49%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE  AT+L E YL  ++LA P L +++ ++    +K A   D ++ R +  G L G+ +G+KD   T  + + A S +L+ ++PP+++T    +     I++GK N+DEF MGS+ E+S +    NPW     +   VP             + C  +  +DTG
Sbjct:   19 REFKATELTEAYLKAIELANPTLNTYVAITAEQAMKMATESDSRLARGQG-GILEGIPLGIKDLFATQGVHTQACSYILDGFKPPYESTVTANLWRDGAIMLGKLNMDEFAMGSSNETSYYGPVINPWRKKGSNEKLVPGGSSGGSAAAVAAQLCAGATATDTG 181          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CHLT37.015e-1833.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_GRABC9.162e-1828.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_EHRCR9.162e-1832.32Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_SACD21.197e-1730.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_ORITB1.197e-1731.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_AKKM81.197e-1740.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_EHRRG2.041e-1732.32Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_DICDI2.041e-1733.94Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_CHRVO2.041e-1730.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BARQU2.041e-1730.49Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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