FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: Y1954_ARCFU (Putative amidase AF_1954 OS=Archaeoglobus fulgidus GN=AF_1954 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 43/130 (33.08%), Postives = 77/130 (59.23%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            E+   +L E  L +++   P++ +F+ ++   ++EA+  D          PLAG+ + +KDN+ T  + +T  S+  ENY P  DA  V+++K+   +++GKTN+ EFG+ + T++  F  T NPWD+SR
Sbjct:   15 EIKPAELVEECLEKIERLNPKINAFVTLNEKAIEEAKKADVST-------PLAGLPIAIKDNVETRGIRTTYCSKFYENYVPEEDAVLVERLKKAGAVIIGKTNMPEFGLIAYTDNPMFGPTRNPWDLSR 137          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_GLUOX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Gluconobacter oxydans GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R+++A +L   ++  ++  + QL SFI  + +  +EA    D+       G L G+ +G+KD  CT  + +TA S++L N+ PP+++T    + +   + +GK NLDEF MGS   +S+F    NPW     D   VP                + + G+DTG
Sbjct:   19 RKISAVELTNAHIDAIERLDGQLNSFITRTPDQAREAAKASDEALAKGEGGSLCGIPLGIKDLFCTNGVRTTAASKILGNFVPPYESTVTANLLKDGAVFLGKLNLDEFAMGSANLTSAFGPVENPWKRKDSDAKLVPGGSSGGSAAAVAAGLVLGATGTDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DROME (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Drosophila melanogaster GN=gatA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  324 KEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW------DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++AQ  + + K  + +  L GV + +KDN CT D+ +T  SR+L+++ PP+DAT   ++K+   +++GKTN+D+F MG+ T  S +  T N W      D  R+                C  ++GSDTG
Sbjct:   53 QQAQDAEQRYKLRQPISDLDGVTIAIKDNFCTKDVHTTCASRMLQDFVPPYDATVCSRLKQAGAVILGKTNMDQFAMGAGTVDSLYGPTKNIWSEDLNKDHWRIAGGSSGGSASAVAAGLCYAAIGSDTG 182          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Borrelia burgdorferi GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 52/137 (37.96%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  288 LKSFIHVSNNVLKEAQSIDDKIKRNENVG-PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +  +I   ++ L+ A+  DD +K  E    PL G+L+ VKDNI   D   T  S +L+ Y  P+DAT +K++K    I++G+TN+DEF MGST E S +  T NP +   V               Q   SLGSDTG
Sbjct:   54 INGYIEFFDDSLEIAKRYDDCLKNCELEDLPLIGMLIAVKDNISIQDKSLTCASEILKGYISPYDATVIKRLKNKGAILIGRTNMDEFAMGSTCEFSYYGATLNPLNREYVIGGSSGGSAAVVAAFQAPFSLGSDTG 190          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_MAGSA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=gatA PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 50/161 (31.06%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  231 TATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW------DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            TA +L + ++   + A+  L +FI  + ++  EA    D  ++    G + G+ +G+KD  CT  + +TA S +LE ++PP+++T   K+K    I +GK NLDEF MGS+ ++S F    NPW          VP             R  + + G+DTG
Sbjct:   22 TAVELTDAHIKATE-AQRHLNAFIVETPDLALEAAKASDARRQAGTAGSMDGLPIGIKDLFCTEGVQTTAASHILEGFKPPYESTVSGKLKAAGAISLGKLNLDEFAMGSSNQTSYFGAVENPWKKTSDPKAKLVPGGSSGGSAAAVAARMVLGATGTDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BARBK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.481e-17
Identity = 49/160 (30.63%), Postives = 85/160 (53.12%), Query Frame = 3
Query:  234 ATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            AT+L E YL  ++LA P L +++ V+    ++ A   D+++ + E  G L G+ +G+KD   T D+ +   S +L+ ++P +++T    + +   +++GK N+DEF MGS+ E+S +    NPW     D   VP             R CV +  +DTG
Sbjct:   23 ATELTEAYLQAIELANPILNAYVAVTAEQAMRMAAESDNRLAKGE-AGILEGIPLGIKDLFATYDVHTQGCSYILDGFKPKYESTVTANLWKDGAVMLGKLNMDEFAMGSSNETSYYGPVINPWRKKGSDEKLVPGGSSGGSSAAVAARLCVGATATDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ZYMMO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Zymomonas mobilis GN=gatA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 52/163 (31.90%), Postives = 94/163 (57.67%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + +A ++AE++L+    AE +L +FI ++ ++ LK+A+  D K + +  + PL+GV +G+KD  CT    +TA S++++N+ PP+++T  +K+      +VGK NLD+F MGS+ E+S+F    +PW     D +  P             +    + G+DTG
Sbjct:   20 DFSAKEVAESFLTATNEAE-KLNAFITLTPDHALKQAEKAD-KDRASGQLKPLSGVPLGIKDLFCTNGYRTTAASKIIDNFVPPYESTITEKLFSAGAGMVGKLNLDQFAMGSSNETSAFGNVISPWRQKGDDTALTPGGSSGGSAAAVAAKLVPAATGTDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_NEOSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neorickettsia sennetsu (strain Miyayama) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE+++ +L E +L +++       + I V+    ++ A+  D+++KR E+V  L G+   +KD  CT  + +TA SR L N+ P +++T   K+ +   +++GK N+DEF MGS+  SS F    NP      +  VP                  SLGSDTG
Sbjct:   19 REISSLELVEAHLLQIRERNAHTNALILVTEEEARQRAKLADERLKRGESVNTLTGIPCVIKDMYCTKGVRTTAASRALRNFVPTYESTVTSKLIDAGAVMLGKANMDEFAMGSSNTSSFFGPVKNPLKGKKGVDLVPGGSSGGSAAAVADYYSPFSLGSDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PARL1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E+T+T+L   YL  ++ A   L +++ V+ +  ++ A++ D K+ + E  G L G+ +G+KD  CT D+ +TA S +L+ ++P +++T    +     +++GK N DEF MGS+ E+S +    NPW     D   VP               C+ +  +DTG
Sbjct:   19 KEITSTELTGAYLKEMEAAAA-LNAYVTVTADKAMEMAKASDAKLAKGEG-GALEGLPLGIKDLYCTKDVLTTACSHILDGFKPAYESTVTSNLWRDGAVMLGKLNNDEFAMGSSNETSHYGSVVNPWRRKGSDAKLVPGGSSGGSSAAVAANLCLAATATDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORAP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Borrelia afzelii (strain PKo) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 51/137 (37.23%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  288 LKSFIHVSNNVLKEAQSIDDKIKRNENVG-PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +  +I   ++ L+ A+  DD ++  E    PL G+L+ VKDNI   D   T  S +L+ Y  P+DAT +K++K    I++G+TN+DEF MGST E S +  T NP +   V               Q   SLGSDTG
Sbjct:   39 INGYIEFFDDSLEIAKRYDDFLRNCELEDLPLIGMLIAVKDNISIQDKSLTCASEILKGYISPYDATVIKRLKNKGAILIGRTNMDEFAMGSTCEFSYYGATLNPLNREYVIGGSSGGSAAVVAAFQAPFSLGSDTG 175          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y1954_ARCFU2.666e-1733.08Putative amidase AF_1954 OS=Archaeoglobus fulgidus... [more]
GATA_GLUOX2.666e-1730.06Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_DROME2.666e-1733.08Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_BORBU2.666e-1737.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_MAGSA3.481e-1731.06Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BARBK3.481e-1730.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ZYMMO4.547e-1731.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Z... [more]
GATA_NEOSM4.547e-1731.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_PARL15.938e-1729.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_BORAP5.938e-1737.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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