FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: QRSL1_XENTR (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Xenopus tropicalis GN=qrsl1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 47/131 (35.88%), Postives = 77/131 (58.78%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR 614
            ++  T+L +  LS +K     L ++I V+ +  LK+A   D++  + + +G L G+ + +KDN  T  + +T  SR+L+ Y  P++AT V+K+ +   + +GKTNLDEF MGS +  S F    NPW  SR
Sbjct:   17 QIKPTELCQKCLSFIKETS-FLNAYITVTEDFALKQAAEADERFIQGKPLGDLDGIPIAIKDNFSTAGIETTCASRMLKGYIAPYNATVVQKLFDQGAVFMGKTNLDEFAMGSGSTDSIFGPVKNPWSYSR 146          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ANAMM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaplasma marginale (strain St. Maries) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 50/163 (30.67%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR----VPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +A +L E Y+  ++  +  L +F+  +  + L  A   D  ++R E + P++G+ VGVKD  CT  + +TA S +L+N+ P +++T  +K+ +   +++GK N+DEF MGS+   S F    NPW  +      P               C  +LGSDTG
Sbjct:   20 KDFSARELTEAYIGAVE--QDTLNAFVTTTPELALAAADRTDGLLQRGEPIHPMSGIPVGVKDLFCTKGVRTTACSNILKNFVPTYESTVSQKLWDSGAVMLGKLNMDEFAMGSSNTYSCFGPVKNPWKGTEGKDLTPGGSSGGSSAAVAGLLCAGALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ANAMF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaplasma marginale (strain Florida) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 50/163 (30.67%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISR----VPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +A +L E Y+  ++  +  L +F+  +  + L  A   D  ++R E + P++G+ VGVKD  CT  + +TA S +L+N+ P +++T  +K+ +   +++GK N+DEF MGS+   S F    NPW  +      P               C  +LGSDTG
Sbjct:   20 KDFSARELTEAYIGAVE--QDTLNAFVTTTPELALAAADRTDGLLQRGEPIHPMSGIPVGVKDLFCTKGVRTTACSNILKNFVPTYESTVSQKLWDSGAVMLGKLNMDEFAMGSSNTYSCFGPVKNPWKGTEGKDLTPGGSSGGSSAAVAGLLCAGALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 53/145 (36.55%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  270 KLAEPQLKSFIHV-SNNVLKEAQSID--DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            K+ +  + +FI V S  VLKEA+ ++  D +K      PL G +V VK NI       +  S+ L+NY   +DAT VKK++    ++VG TN+DEF  GS+ E+S F  T NP  + R+P               C +++GSDTG
Sbjct:   12 KIEKSDVNAFIDVNSEKVLKEAEELEKNDALKNK----PLYGKIVAVKSNINVKGYKISCASKTLDNYIGTYDATVVKKLRSQGALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTG 152          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DINSH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dinoroseobacter shibae (strain DFL 12) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 48/164 (29.27%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLK-EAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE+TAT+L E  L+ ++ A   L +F+H + ++ + +A++ D ++   +    + G+ +G+KD  CT  +PS A S +L  ++P +++T   ++     +++GK N+DEF MGS+ E+S++    NPW     D +  P               C+ + G+DTG
Sbjct:   19 REITATELTEACLAEVEGAGA-LGAFVHNTPDLARAQAEAADARLAAGD-APAMCGIPLGIKDLFCTKGVPSQAASAILGGFKPEYESTVTSQLFAAGAVMLGKLNMDEFAMGSSNETSTYGNAVNPWRRGNEDTALTPGGSSGGSASAVAADLCLAATGTDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_AGRVS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.013e-16
Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +++TA +L + YL  ++ A   + +++ V+  + ++     D        G L G+ +GVKD   T D+ + A S +L+ ++P +++T  + +     +++GK N+DEF MGS+ E+S +    NPW     +   VP             R C  +  SDTG
Sbjct:   19 KDITAVELTDAYLGAIEAANGAINAYVTVTPEIARDMAKASDARLATGKAGALEGIPLGVKDLFATRDVHTQACSNILDGFKPKYESTVTQNLWNEGAVMLGKLNMDEFAMGSSNENSFYGPVVNPWRATGSEEKLVPGGSSGGSAAAVAARLCAGATASDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_WOLPP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDK--IKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R  +A +L ET+++ ++    QL +FI  +  +  +A  I D+  +K+ +++ PL G+ VGVKD  CT  + +TA S++LEN+ P +++T    + +    V+GK N+DEF MGS   +S F    N W         VP               C  +LGSDTG
Sbjct:   19 RNFSAVELVETHINAVE--NEQLNAFITKTPEIAIKAAKIADEHFLKQKDDIPPLMGIPVGVKDLFCTKGIKTTACSKMLENFIPTYESTVSNLLLKSGAAVLGKLNMDEFAMGSANTNSYFGPVENVWIRKSDGAKVVPGGSSGGSAASVAGFLCAGALGSDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHOS4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW---DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E++A  L    L+ +    P L +F+H +  + L +A++ D   +R    G L G+ +G+KD  CT  + S A S +L+ ++P +++T   K+ E   +++GK N+DEF MGS+ E+S +    NPW   D    P               C+ + G+DTG
Sbjct:   19 ELSAVDLTMACLTAIDAGTP-LNAFVHATPEIALDQARAAD--ARRGAGAGALNGIPLGIKDLFCTRGVASQAASNILKGFKPEYESTVTSKLFEAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRRLTPGGSSGGSAAAVAADLCLAATGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CAMFF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  309 SNNVLKEAQSIDDKIKRNENVGPL-------------AGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            S++++K  +++ DKIK N  +G               AGV + +KDNI   +   T+ S++L+ Y  P+ AT V+K+ +      G+TN+DEF MGSTTESS +  T NP D +RVP                + +LGSDTG
Sbjct:   12 SSDIVKLRKNLKDKIKDNRQLGAYIEQLTNSDISDEYAGVPIAIKDNIQVKNWSITSCSKILQGYVAPYHATVVEKLLKAGLAPFGRTNMDEFAMGSTTESSFYGKTLNPLDHTRVPGGSSGGSAAAVSAGLAIAALGSDTG 153          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BORGA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Borrelia garinii GN=gatA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.323e-16
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  288 LKSFIHVSNNVLKEAQSIDDKIKRNENVG-PLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +  +I   ++ L  A+  DD +K  E    PL G+ + VKDNI   D   T  S +L+ Y  P+DAT +K++K    I++GKTN+DEF MGST E S +  T NP +   V               Q   SLGSDTG
Sbjct:   39 INGYIEFFDDSLDIAKRYDDCLKNCELEDLPLIGMPIAVKDNISIQDKSLTCASEILKGYISPYDATVIKRLKNKGAILIGKTNMDEFAMGSTGEFSCYGATLNPLNREYVIGGSSGGSAAVVASFQAPFSLGSDTG 175          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
QRSL1_XENTR7.756e-1735.88Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]
GATA_ANAMM7.756e-1730.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANAMF7.756e-1730.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METM71.013e-1636.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DINSH1.013e-1629.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_AGRVS1.013e-1626.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_WOLPP1.323e-1632.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_RHOS41.323e-1630.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_CAMFF1.323e-1635.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BORGA1.323e-1637.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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