FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHOSK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW---DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E++A  L    L+ +    P L +F+H +  + L +A++ D   +R    G L G+ +G+KD  CT  + S A S +L  ++P +++T   K+ E   +++GK N+DEF MGS+ E+S +    NPW   D    P               C+ + G+DTG
Sbjct:   19 ELSAVDLTMACLTAIDAGTP-LNAFVHATPEIALDQARAAD--ARRGAEAGALNGIPLGIKDLFCTRGVASQAASNILRGFKPEYESTVTSKLFEAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRRLTPGGSSGGSAAAVAADLCLAATGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHOS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW---DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E++A  L    L+ +    P L +F+H +  + L +A++ D   +R    G L G+ +G+KD  CT  + S A S +L  ++P +++T   K+ E   +++GK N+DEF MGS+ E+S +    NPW   D    P               C+ + G+DTG
Sbjct:   19 ELSAVDLTMACLTAIDAGTP-LNAFVHTTPEIALDQARAAD--ARRGAGAGALNGIPLGIKDLFCTRGVASQAASNILRGFKPEYESTVTSKLFEAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRRLTPGGSSGGSAAAVAADLCLAATGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHORT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 48/160 (30.00%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  231 TATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            T  +L   +L+R++ A   L +FI  + ++ +       +  R    GP+ G+ +G+KD  CT  + +TAGS++L+ + PP+++T    + +   +++GKTNLDEF MGS+ ++S+     NPW     D   VP             R  + + G+DTG
Sbjct:   25 TPLELTNAHLARME-AGRGLNAFITETPDLARMQAERSGERLRAGKAGPMEGIPIGIKDLFCTEGVRTTAGSKILDGFVPPYESTVSANLAKAGAVMLGKTNLDEFAMGSSNKTSASGPVINPWTRTDDDEQLVPGGSSGGSAAAVAGRLAMAATGTDTG 183          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHOPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodopseudomonas palustris (strain BisB5) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +  TA +L E +L+ ++ A       +       K AQ+ D +I   +  GPLAG+ +G+KD   T D  +TA S++L ++ PP+++T   ++     ++VGK N DEF MGS+ E+S F    NPW     +   VP               C+ +  +DTG
Sbjct:   19 KSFTALELTEAHLTAIEAARGLNAFVLETPEQARKMAQAADAQIATGDG-GPLAGIPLGIKDLFATKDTRTTACSKILGDFHPPYESTVTTQLWRDGAVMVGKLNNDEFAMGSSNETSCFGPVVNPWRRAGSETKLVPGGSSGGSAAAVAAGLCLGATATDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHILO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhizobium loti GN=gatA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 44/133 (33.08%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRV 617
            +E+TAT++ E YLS +  A P L +++ V+ +  ++ A++ D ++ + E  G L G+ +G+KD   T  + + A S VL+ ++P +++T    +     +++GK N+DEF MGS+ E+S +    NPW  SR+
Sbjct:   19 KEITATEITEAYLSAIDRANPALNAYVAVTGDRARDMAKASDARLVKGEG-GALEGIPLGIKDLFGTEGVHTQACSHVLDGFKPLYESTVTANLWADGAVMLGKLNMDEFAMGSSNETSYYGPVINPWRRSRL 150          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ORITI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Orientia tsutsugamushi (strain Ikeda) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 52/163 (31.90%), Postives = 80/163 (49.08%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E TAT L   +++++            +    L+ A+  D  I+ N+   P+ G+ V +KD  CT  + +TA S++L+N+ P +DAT   K+    GI++GK N+DEF MGS   +S F    NPW     DI   P                + +LGSDTG
Sbjct:   19 KEFTATDLVTAHINQMDKYRCINAYITEIPELALQAAKKSDFLIQTNQ-ARPIEGIPVSIKDLFCTKGILTTAASKMLQNFTPVYDATVYSKIINAGGIMLGKGNMDEFAMGSANINSYFGNVINPWKAENDDIDLTPGGSSGGSSAAVAAFMAMAALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=gatA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 53/164 (32.32%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFI-HVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +A +L +  L+ ++ A   L +FI       L  A++ D +I R E  GPL GV +G+KD  CT  + +TA S +LE ++P +++T    +     +++GK NLDEF MGS+ E+S F    +PW     D   VP             R C  +  +DTG
Sbjct:   19 KDFSAVELVKAQLAEIEQARA-LNAFIKETPEKALAMAEASDARIARGE-AGPLEGVPLGIKDLYCTEGVETTAASHILEGFKPAYESTVSANLWRDGAVMLGKLNLDEFAMGSSNETSYFGPVVSPWRRKGSDARIVPGGSSGGSAAAVAARLCFGATATDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_EHRCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia canis (strain Jake) GN=gatA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 52/164 (31.71%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKI--KRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE +A +L + ++  +     +L +F+  +  +   A    D I   + EN+ PL G+ VG+KD  CT ++ +TA S +L+N+ P +D+T  K +     +++GK N+DEF MGS+  +S F    NPW        VP               C  +LGSDTG
Sbjct:   19 REFSAVELTKLHIEAVD--NEKLNAFVTKTPEIALSAAEKADHIFTHQQENLTPLTGIPVGIKDLFCTKNVRTTACSNILKNFIPQYDSTVTKLLLNNGAVMLGKLNMDEFAMGSSNSNSCFGNVKNPWIRADGAEVVPGGSSGGSSAAVAGFLCAGALGSDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHOS5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW---DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E++A  L    L+ +    P L +F+H++  + L +A++ D   +R E  G L G+ +G+KD  CT  + S A S +L+ ++P +++T   K+     +++GK N+DEF MGS+ E+S +    NPW   D    P               C+ + G+DTG
Sbjct:   19 ELSAVDLTMACLTAIDAGTP-LNAFVHLTPEIALDQARASD--ARRGEGAGALNGIPLGIKDLFCTRGVASQAASNILKGFKPEYESTVTSKLFAAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRKLTPGGSSGGSAAAVAADLCLGATGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: AMI4_MYCTU (Putative amidase amiD OS=Mycobacterium tuberculosis GN=amiD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R++T+ ++ E+ L R++  +PQLKS+  V     L  A++ D  I R    G L GV +GVKD   TVD P+ AG+ +  ++RP +DAT V +++    +++GK  + E          S     NPWD +                  C  S+GSDTG
Sbjct:   32 RQLTSAEVTESTLRRIERLDPQLKSYAFVMPETALAAARAADADIARGHYEGVLHGVPIGVKDLCYTVDAPTAAGTTIFRDFRPAYDATVVARLRAAGAVIIGKLAMTEGAY--LGYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSDTG 188          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_RHOSK1.728e-1630.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHOS11.728e-1630.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHORT1.728e-1630.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHOPS1.728e-1630.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHILO1.728e-1633.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_ORITI1.728e-1631.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_METSB1.728e-1632.32Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_EHRCJ1.728e-1631.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_RHOS52.257e-1630.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
AMI4_MYCTU2.947e-1632.08Putative amidase amiD OS=Mycobacterium tuberculosi... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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