FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: AMI4_MYCBO (Putative amidase amiD OS=Mycobacterium bovis GN=amiD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 51/159 (32.08%), Postives = 79/159 (49.69%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R++T+ ++ E+ L R++  +PQLKS+  V     L  A++ D  I R    G L GV +GVKD   TVD P+ AG+ +  ++RP +DAT V +++    +++GK  + E          S     NPWD +                  C  S+GSDTG
Sbjct:   32 RQLTSAEVTESTLRRIERLDPQLKSYAFVMPETALAAARAADADIARGHYEGVLHGVPIGVKDLCYTVDAPTAAGTTIFRDFRPAYDATVVARLRAAGAVIIGKLAMTEGAY--LGYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSDTG 188          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHILW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 41/128 (32.03%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLK-EAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW 602
            +E+TA +L E Y+S +  A   L ++I V+ ++ +  A++ D++I   +  G L G+ +G+KD   TV + + A S +L+ + P +++T  + + +   +++GK N+DEF MGS+ E+S +    NPW
Sbjct:   19 KEITALELTEAYISAIDAANGHLNAYIKVTPDLARLMAKNSDERIAAGK-AGDLEGIPLGIKDLFATVGVHTQACSHILDGFEPRYESTVTQNLWDDGAVMLGKLNMDEFAMGSSNETSHYGAVINPW 145          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METM6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  270 KLAEPQLKSFIHV-SNNVLKEAQSID--DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            K+ +  + +FI V S  VLKEA+ ++  D +K      PL G +V VK NI       +  S+ LE Y   +DAT VKK++    ++VG TN+DEF  GS+ E+S F  T NP  + R+P               C +++GSDTG
Sbjct:   12 KIEKSDVNAFIDVNSEKVLKEAEELEKNDYLKNK----PLYGKIVAVKSNINVKGYKISCASKTLEKYTGTYDATVVKKLRLQGALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTG 152          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CELJU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cellvibrio japonicus (strain Ueda107) GN=gatA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 45/158 (28.48%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ ++T++ + YL R+   +    S+I V+ +V  +  +  DK     N   L GV +  KD  CT  + ++  S++L+ +  P++AT V+   +   +++GKTN+DEF MGS+ E+S +    NPW+   VP                  +  SDTG
Sbjct:   16 KDFSSTEITQHYLDRIARLDNTYNSYITVTGDVALQQAAAADKRLAAGNTSALCGVPIAHKDIFCTAGVRTSCASKMLDKFIAPYNATIVENYLKAGVVMLGKTNMDEFAMGSSNETSWYGPVKNPWNTHCVPGGSSGGSAAAVAAHLAPAATASDTG 173          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SINMW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sinorhizobium medicae (strain WSM419) GN=gatA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 45/163 (27.61%), Postives = 82/163 (50.31%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E+TA +L + YL+ ++ A   + ++I V+ +  +E     D        G L G+ +G+KD   T  + + A S +L+ +RP +++T  + +     +++GK N+DEF MGS+ E+S +    NPW     ++  VP             R C  +  +DTG
Sbjct:   19 KEITAVELTDAYLAAIEAANETINAYIAVTPDKAREMAKASDARIGAGKAGALEGIPLGIKDLFGTQGLHTQACSHILDGFRPHYESTVTQNLWNDGAVMLGKLNMDEFAMGSSNETSYYGPVKNPWRAKESNLDLVPGGSSGGSAAAVAARLCAGATATDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METPB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=gatA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 47/163 (28.83%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +A ++A+ +L  ++ A+      +   +  LK A   D+KI + E   PL G+ +G+KD   T  + +TAGS++LE + P +++    ++     +++GK NLDEF MGS+ E+S++  T +PW     D   VP               C+ +  +DTG
Sbjct:   19 KDFSAREIAQAHLDAIERAKALNAYIVATPDRALKMADVSDEKIAKGE-ARPLEGLPLGIKDLFATQGVHTTAGSKILEGFEPHYESNVSSQLWRDGAVMLGKLNLDEFAMGSSNETSAYGKTISPWRRQGSDTPLVPGGSSGGSAAAVAAHLCLGATATDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METM5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=gatA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 52/145 (35.86%), Postives = 77/145 (53.10%), Query Frame = 3
Query:  270 KLAEPQLKSFIHV-SNNVLKEAQSID--DKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            K+ +  + +FI V S  VLKEA+ ++  D +K      PL G +V VK NI       +  S+ LE Y   +DAT VKK++    ++VG TN+DEF  GS+ E+S +  T NP  + R+P               C +++GSDTG
Sbjct:   12 KIEKSDVNAFIDVNSEKVLKEAEELEKNDDLKNK----PLYGKIVAVKSNINVKGYKISCASKTLEKYVGTYDATVVKKLRSQGALIVGMTNMDEFAGGSSGETSCYGPTKNPAALDRIPGGSSSGSAAAVAADLCDMAIGSDTG 152          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_HELHP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter hepaticus GN=gatA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  288 LKSFIHVSNNVLKEA-----QSIDDKIKRNENVGPL----AGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            LK  ++ S N LKE      Q + + I+ N  +G +    +GV + +KDNI       T  S++L+ Y  P++A+ + K+ E      G+ N+DEF MGSTTESS +    NP D SRVP                + SLGSDTG
Sbjct:    4 LKEALNKSENELKEIKTLLRQRVKENIELNAYIGEINESGSGVPILIKDNINVKGWEITCASKILKGYVSPYNASVITKLHENKMCAFGRANMDEFAMGSTTESSCYGRVKNPLDTSRVPGGSSGGSAAAVAAGLAIASLGSDTG 148          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CAMHC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=gatA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  288 LKSFIHVSNN-VLKEAQSIDDKIKRNENVGPL-------------AGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            LK  + +S + +L   + + DKI + +++G               +G+ + +KDNI   +   T+ S +L+ Y  P+DAT + K++       G+TN+DEF MGSTTESS +  T NP D SRVP                V +LGSDTG
Sbjct:    4 LKEALKLSKDEILALRKELKDKILKTKDLGAYIEQLTGEDLNESGSGIPIAIKDNIQVKNWSVTSASNILQGYVAPYDATVITKLRSAGFAPFGRTNMDEFAMGSTTESSFYGKTLNPTDYSRVPGGSSGGSAAAVAAGIAVAALGSDTG 153          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BARHE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bartonella henselae GN=gatA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 48/164 (29.27%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE+ AT+L E YL  ++LA P L +++ ++    +K A   D ++ +    G L G+ +G+KD   T D+ + A S +L+ ++P +++T    +     +++GK N+DEF MGS+ E+S +    +PW     +   VP               CV +  +DTG
Sbjct:   19 RELKATELTEAYLKAIELANPILNTYVAITAEQAMKMAAKSDSRLAKGHG-GILEGIPLGIKDLFATQDVHTQACSYILDGFKPHYESTVTANLWRDGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRKKDSNEKLVPGGSSGGSAAAVAAGLCVGATATDTG 181          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AMI4_MYCBO2.947e-1632.08Putative amidase amiD OS=Mycobacterium bovis GN=am... [more]
GATA_RHILW3.849e-1632.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METM63.849e-1636.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CELJU3.849e-1628.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SINMW5.027e-1627.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METPB5.027e-1628.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METM55.027e-1635.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_HELHP5.027e-1635.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CAMHC5.027e-1634.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BARHE5.027e-1629.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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