FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHIL3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gatA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 41/128 (32.03%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW 602
            +E+TA +L E Y+S +  A  +L ++I V+ ++ +  A++ D++I   +  G L G+ +G+KD   TV + + A S +L+ + P +++T  + + +   +++GK N+DEF MGS+ E+S +    NPW
Sbjct:   19 KEITAIELTEAYISAIDAANGRLNAYIKVTPDLARVMAKNSDERIAAGK-AGELEGIPLGIKDLFATVGVHTQACSHILDGFEPRYESTVTQNLWDDGAVMLGKLNMDEFAMGSSNETSYYGPVINPW 145          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHOP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodopseudomonas palustris (strain HaA2) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 47/163 (28.83%), Postives = 83/163 (50.92%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +  TA +L + +L+ ++ A       +   +   + AQ+ D +I + E  GPLAG+ +G+KD   T    +TA S++L +++PP+++T   ++     +++GK N DEF MGS+ E+S F    NPW     +   VP               C+ +  +DTG
Sbjct:   19 KSFTAVELTDAHLAAIEAARVLNAYVLETPDQARQMAQAADAQIAKGEG-GPLAGIPLGIKDLFATKGTRTTACSKILGDFKPPYESTVTSQLWRDGAVLLGKLNNDEFAMGSSNETSCFGPVVNPWRRAGSETKLVPGGSSGGSAAAVAAGLCLGATATDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_OCHA4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 46/164 (28.05%), Postives = 87/164 (53.05%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + +TAT+L + YLS +  A   + +++ V+++  +  A++ D++I + E  G L G+ +GVKD   T  + + A S +L+ ++P +++T    +     +++GK N+DEF MGS+ E+S +    NPW     +   VP             + C  +  +DTG
Sbjct:   19 KAITATELTDAYLSAIDSANETINAYVKVTHDQARSMAKASDERIAKGE-AGALEGIPLGVKDLFATKGVHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEFAMGSSNETSYYGSVKNPWRANGSNADLVPGGSSGGSAAAVAAQLCAGATATDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METC4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 47/163 (28.83%), Postives = 84/163 (51.53%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +A ++A+ +L  +  A+      +   +  LK A+  D KI + E   PL G+ +G+KD   T  + +TAGS++LE + P +++    ++     +++GK NLDEF MGS+ E+S++  T +PW     D   VP               C+ +  +DTG
Sbjct:   19 KDFSAREIAQAHLDAIDRAKALNAYIVATPDRALKMAEVSDQKIAKGE-ARPLEGLPLGIKDLFATQGVHTTAGSKILEGFEPHYESNVSSQLWRDGAVMLGKLNLDEFAMGSSNETSAYGKTISPWRRQGSDAPLVPGGSSGGSAAAVAAHLCLGATATDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BEII9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++++A +LA  ++  ++ A       +         A++ D+KI R E  GPL G+ +G+KD  CT  + +TA S +LEN+ P ++++    +     +++GK NLDEF MGS+ E+S F    +PW          P             R C+ +  +DTG
Sbjct:   19 KKISAAELAMAHIEAVEKARALNAFLLETPERAQAMARASDEKIARGE-AGPLEGIPLGIKDLFCTEGVRTTAASHILENFVPAYESSITANLWRDGAVMLGKLNLDEFAMGSSNETSYFGPVVSPWRREGSTAPLTPGGSSGGSAAAVAARLCLGATATDTG 180          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_RHIEC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 40/128 (31.25%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW 602
            +E+TA +L E Y+S +  A  +L +++ V+ ++ +  A+  D++I      G L G+ +G+KD   TV + + A S +L+ + P +++T  + + +   +++GK N+DEF MGS+ E+S +    NPW
Sbjct:   19 KEITAIELTEAYISAIDAANERLNAYVKVTPDLARVMARKSDERIAAG-TAGELEGIPLGIKDLFATVGVHTQACSHILDGFEPRYESTVTQNLWDDGAVMLGKLNMDEFAMGSSNETSYYGPVINPW 145          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BRUSU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella suis GN=gatA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + +TAT+L + YLS +  A   + +++ V+++  +  A++ D++I + E  G L G+ +GVKD   T  + + A S +L+ ++P +++T    +     +++GK N+DEF MGS+ E+S +    NPW     +   VP               C  +  +DTG
Sbjct:   19 KAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAKGE-AGALEGIPLGVKDLFATKGVHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEFAMGSSNETSYYGPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BRUSI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + +TAT+L + YLS +  A   + +++ V+++  +  A++ D++I + E  G L G+ +GVKD   T  + + A S +L+ ++P +++T    +     +++GK N+DEF MGS+ E+S +    NPW     +   VP               C  +  +DTG
Sbjct:   19 KAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAKGE-AGALEGIPLGVKDLFATKGVHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEFAMGSSNETSYYGPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BRUO2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + +TAT+L + YLS +  A   + +++ V+++  +  A++ D++I + E  G L G+ +GVKD   T  + + A S +L+ ++P +++T    +     +++GK N+DEF MGS+ E+S +    NPW     +   VP               C  +  +DTG
Sbjct:   19 KAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAKGE-AGALEGIPLGVKDLFATKGVHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEFAMGSSNETSYYGPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BRUME (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella melitensis GN=gatA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPW-----DISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            + +TAT+L + YLS +  A   + +++ V+++  +  A++ D++I + E  G L G+ +GVKD   T  + + A S +L+ ++P +++T    +     +++GK N+DEF MGS+ E+S +    NPW     +   VP               C  +  +DTG
Sbjct:   19 KAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAKGE-AGALEGIPLGVKDLFATKGVHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEFAMGSSNETSYYGPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTG 181          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_RHIL36.566e-1632.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHOP28.575e-1628.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_OCHA48.575e-1628.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_METC48.575e-1628.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BEII98.575e-1628.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_RHIEC1.120e-1531.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_BRUSU1.120e-1528.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BRUSI1.120e-1528.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BRUO21.120e-1528.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BRUME1.120e-1528.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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