FC920235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19 Identity = 65/201 (32.34%), Postives = 90/201 (44.78%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 K PR GSL F PRKRA K K++P+ + L F GYK GMTH++ + S KE VTIIE Y K G +L +WA+ L ++ RR Y++ KK L + + LA+TQ M G+ +K LMEI+V GG IA++ +YA+G K+ Sbjct: 3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRR-------------VTSPKNYDSTAAKKKYSDAL--AAGLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKE 186
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19 Identity = 66/194 (34.02%), Postives = 97/194 (50.00%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ +E+ R+ + E + +S+ A LEK +RV+ HT K G+ +KK ++EI+V G ++AEK+ YA Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYA 175
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19 Identity = 66/194 (34.02%), Postives = 97/194 (50.00%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ET Y KT +GL++L VWA+ +E+ R+ + E + +S+ A LEK +RV+ HT K G+ +KK ++EI+V G ++AEK+ YA Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYA 175
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18 Identity = 63/195 (32.31%), Postives = 94/195 (48.21%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 + PR GS+ F PRKRAAR +VK++P+ D+P L A GYKAGMTH++ + S E VTI+E Y KT RGL++L V A +++RR+ Y+ + + I++ +E Y + VRV+ HT R + + +KK + E + G T EK +YA Sbjct: 3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL------------TPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYA 176
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 58/190 (30.53%), Postives = 95/190 (50.00%), Query Frame = 1 Query: 64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 PR GS+GF PR RAA + ++P DD +P L F GYKAGM+H+V ++P S +E VT++ET Y TP G R L VW + E++ R + ++ + + I+ L+ + + VRV+ HT + + +K+ +ME +V GG+++++VD+A Sbjct: 7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFA 178
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17 Identity = 64/198 (32.32%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 PR GSL F PRKRA R +++++P++D RL AF YKAGM+H + P S +E +TI+E Y + R L +L VWA +L +E+ R+ + E +K+++ LE +K VRVL HT K+ L +KK ++EI++ G I E+++YA KQ Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEED---TVRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQ 183
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17 Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 1 Query: 64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 648 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA E + R DEG + + + + +RV+ HT G+ +K +ME +V GGT+A+++++A E Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17 Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 1 Query: 64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 648 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ET Y TP G + L VWA E + R DEG + + + + +RV+ HT G+ +K +ME +V GGT+A+++++A E Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17 Identity = 60/201 (29.85%), Postives = 96/201 (47.76%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++ S + +E VT+IET Y KT G++ VW+ +L + + RR + + ++ ++ AS VRV+ +TQ + G+ +K +ME ++ GG + E +DYA K+ Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKE 179
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17 Identity = 57/197 (28.93%), Postives = 87/197 (44.16%), Query Frame = 1 Query: 64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 648 PR GSLGF PRKR+ + ++P DD + F GYKAGMTH+V ++P S E VT+IET Y TP G R L VW E+ R D + + Q+ + + +R++ HT + + +KK +ME +V GG++++++D+A E Sbjct: 7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-----------------DVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVE 184 The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bpback to top |