FC920235

Overview
NameFC920235
Unique NameFC920235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:26..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 61/215 (28.37%), Postives = 97/215 (45.12%), Query Frame = 1
Query:   40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKE 202          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 61/215 (28.37%), Postives = 97/215 (45.12%), Query Frame = 1
Query:   40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKE 202          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 61/215 (28.37%), Postives = 97/215 (45.12%), Query Frame = 1
Query:   40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKE 202          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 61/215 (28.37%), Postives = 97/215 (45.12%), Query Frame = 1
Query:   40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            M HRK   PR GS G  PRKR++      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E           Y    +G  ++ T  W+    +  ++ RR +                  + DE KK  +    ++L+ IK     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKE 202          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 61/190 (32.11%), Postives = 88/190 (46.32%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            PR GSL + PRKRA     K +++P+ +      L  F GYKAGMTH++   +   S    KE    VT+IE           YVK   G   L  VWA++L E +  R  K                 +T+   K+ +     I     V+ VL +T+  ++ G+ +K   LMEI+V GG+  E+ DYA
Sbjct:    6 PRAGSLAYYPRKRAKGIVPKYQSWPEYNGQP--MLQGFAGYKAGMTHVIMIDDHKKSPTEGKEVMVPVTVIEIPAMTVAAIRVYVKDTYGKHPLTEVWAENL-EALSGRITK----------------AKTNNAAKATEKINAAIGDVVEVM-VLMYTKPTELTGVPKKVPDLMEIRVAGGSAQERFDYA 175          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 59/198 (29.80%), Postives = 87/198 (43.94%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFP--KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651
            PR GSL + PRKRA     K  A+P  + +P+    L  F GYK GMTH++   +   S    K+    VT+IE           Y     G   L  VWA    +E+ RR                   Y+ +E +K I+  LE   K   VV  L +T+   + G+ +K   LME +++GG++ E+ +Y      K
Sbjct:    7 PRMGSLAYSPRKRAKSPVPKYHAWPAYQGEPA----LQGFAGYKVGMTHVIMVDDHAHSPNEGKDIMVPVTVIEVPDMRVAAIRVYRHDTYGNHVLTEVWADSFDKELSRRL-------------NLSKNYKREEAEKKIREALE-ADKIVDVV-ALTYTRPSVLTGVPKKVPDLMETRIDGGSMTERFEYGLSMLGK 185          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 51/189 (26.98%), Postives = 83/189 (43.92%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDY 630
            PR GS+GF PRKRA     +++++  +D +   +   F GYKAGMT ++   ++  S     E    VT++ET          Y  TP G + L  VW +     + R                    +E D       A+   I      VR++ HT    M+ + +K   +ME +V GGT+ ++V++
Sbjct:    7 PRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSPREGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-----------DLPNEDTFEDDAAALRDDAETGDIDD----VRLITHTLPAGMRNIPKKTPDVMETRVGGGTLTDRVEF 178          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP-RGLR-SLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEK 651
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P  G + ++   W      ++RR                   +++T++  K+    LE+ +  A  VRVL  TQ R + G+ +K   ++EI V G  +I E++++A     K
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRR-------------VLTLPEKFDTEKQLKA----LEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGK 187          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METS5 (50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 57/200 (28.50%), Postives = 86/200 (43.00%), Query Frame = 1
Query:   40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRS-LNTVWAQ--HLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDY 630
            M HRK   PR GS G  PRKR+       +++P+ +   P  L  F+GYK GMTHI    E   S +  KE    VT++ET          Y    RG  S +  VW       + + RR                  + + +   K I++ LE +    S  R+L  TQ   +  L +K   ++E+Q+ GG    +++Y
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRSEELLPSPRSYPEVNLPNPVTL-GFVGYKVGMTHIFMIDEDRSSSMFGKEIYVPVTVLETPPIYVLALRAYGLNNRGEHSVMGEVWGDLGDFGKFITRRI-----------RGLKIDKEKKEHQLKDIESNLESV----SYFRLLVSTQPHLIPALGKKTPDIVEVQIGGGNTKNQLEY 184          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 51/201 (25.37%), Postives = 91/201 (45.27%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            K   PR GSL + PRKRA     +  ++P+   +   +   F GYK GMTH++   +   S    K+    VT++E           Y +   G  +L   W   L EE+ RR                   ++T    ++++A + + K   S +  LA+T+  ++ G+ +K   LME+++ GG++ +++ YA     K+
Sbjct:    3 KINRPRRGSLAYSPRKRAKSPVPRYGSWPEYTGAPAVQ--GFAGYKVGMTHVIMVDDHKSSPTEGKDVMVPVTVVEVPPMRVAGVRAYGEDTYGKHALTEAWTTDLDEELSRRI-------------NVPKNHDTAAALEAVKAAVGEGK--VSELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKE 186          
The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_SULIN6.197e-1428.3750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIM6.197e-1428.3750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL6.197e-1428.3750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK6.197e-1428.3750S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_METLZ6.197e-1432.1150S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_METHJ1.057e-1329.8050S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_HALWD1.057e-1326.9850S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]
RL3_PYRCJ1.803e-1330.0550S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_METS53.076e-1328.5050S ribosomal protein L3P OS=Metallosphaera sedula... [more]
RL3_METMJ5.246e-1325.3750S ribosomal protein L3P OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionC32005F11EF RVDevelop1 Citrus clementina cDNA clone C32005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bp
GAAAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTCACAG
GAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGC
GAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGACCCA
AGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGATGAC
CCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGG
AGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGTGGTT
GGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGAACAC
TGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTACAAGA
ACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCAGTAT
GAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGATCAA
GAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAA
TGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAAT
GGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAA
GCAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACAT
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