FC920236

Overview
NameFC920236
Unique NameFC920236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 48/148 (32.43%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIG-GSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            +L    +  +GV+   +++Y L     G++   +  E     +  VV+  + G R++G L  GN  G+LLP    D+E++ +R +L + V V  +  R +ALGN I CND   L    L++E  + ++D LGVEV   ++AG   VGS
Sbjct:   11 KLSLYGNPNIGVYLTASDSYVLAPDDIGADDVRTISEVLGVAMERVVRLRVLGMRLVGVLTTGNSRGILLPEGV-DREVELVRKAL-EGVEVGIVPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGS 156          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 48/150 (32.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            M  +   + +  +GV     +   +V+ G  +S+  + +  L    P++KT I G+ + G L AGN NGLL+       EL  LR      + V+ + ++L+A+GN I  ND+ AL +  L  E + +I + L VEV   +IAG  +VGS
Sbjct:    1 MIQKFDIDGNPNLGVSILAKDNVAIVSPGLQDSYLKSIKETLN--VPIIKTPICGSNLAGALMAGNSNGLLISPYVFSHELDVLREH---DINVEIMPDKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGS 145          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.119e-12
Identity = 52/139 (37.41%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNI-LVGS 646
            +GV+    N   LV    +E      E  L     V++T I    I G + AGN NGLLLP     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGS 149          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELA-DVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            +GV+    + + L+     E         L+ D F V   S+ GTR++G   AGN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +    L +   + IAD LGVE  + +I     VGS
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLSVDAFRV---SVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGS 149          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVG 643
            +GVF+  T    +V IG +        AE  DV  V+ T I G+ ++G L  GN NG L+       +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R TIAG   VG
Sbjct:   13 LGVFATCTEDVAIVPIGTAGKAIDLL-AEQLDV-KVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVG 141          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVG 643
            M   L +E    +G+F+++     +V    S  + +  +  L     +VKT + G+ IIG L +GN  G ++       E++    ++ +   V  +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG
Sbjct:    1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVG 143          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVG 643
            +GVF+  T    LV  G      +  E  L     +V+T + G+ +IG L  GN NG L  + T   E++ L       V  + +  +L+A+GN +  ND  AL H +L  +  E+IA  L VEV+R TIAG   VG
Sbjct:   13 IGVFATCTEDVVLVPTGTKPETCAILEDSLDA--RIVETLVNGSVVIGALSRGNSNGFLYSYGTDAGEMKELTG-----VEAEILPGKLNAVGNIVLANDSAALVHPELSDKAIEVIASTLKVEVYRGTIAGIKNVG 142          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            M  R+    +  +GV+  +T++  L+     E F       L     V+K SI G+ + G L  GN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+    L  +  ++I DVL V+V   T+AG  +VGS
Sbjct:    1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGS 145          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 46/138 (33.33%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            +G +   +  Y +VA    +      + E  DV  VV+T++ G+ ++G L A N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H DLD    E+I  VLG  V R  + G   VGS
Sbjct:   14 IGAWIAASEEYAVVAPKVPDDIVERVK-EALDV-EVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGS 146          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 44/154 (28.57%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSTE 667
            R  F  S  +GVF++ T +  LV     + F  +   EL    P V+T++GG+  +G L AGN +GLL+ +   ++E   +  +    V V  +   ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+    +T+
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTD 151          
The following BLAST results are available for this feature:
BLAST of FC920236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF6_AERPE1.242e-1232.43Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_METST2.119e-1232.00Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_HYPBU2.119e-1237.41Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_THEPD2.767e-1232.37Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_METBU2.767e-1235.77Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_METPE4.720e-1230.20Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_METBF6.165e-1235.04Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_METTH8.051e-1231.33Translation initiation factor 6 OS=Methanobacteriu... [more]
IF6_METKA1.373e-1133.33Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_HALS31.794e-1128.57Translation initiation factor 6 OS=Halobacterium s... [more]

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Properties
Property NameValue
Genbank descriptionC32005G01EF RVDevelop1 Citrus clementina cDNA clone C32005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920236 ID=FC920236; Name=FC920236; organism=Citrus clementina; type=EST; length=724bp
GATAGAAAGTAGGAAGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGG
TACTGGGGTTTGTTTCCGGCCGAAAGGGTAGCAAGTGAAGGGCCGCCTCA
TCATCATTATCATCAGCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTC
CGTCATTTTGCTTTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGG
CAACCAGGCTTATGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAG
CTCACTAATGCTTATTGCTTGGTTGCAATAGGAGGTTCTGAAAGCTTCTA
CAGCACATTTGAGGCTGAGTTAGCAGATGTTTTTCCTGTTGTTAAAACAT
CTATTGGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAAT
GGGCTTCTCTTGCCGCACACTACCACAGACCAAGAACTTCAACACTTGAG
GAACAGCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTAT
CTGCCCTGGGCAACTGTATAGCATGCAACGACCATGTTGCTCTTACACAC
ACAGATCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGT
AGAAGTTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACT
GTTCCTTCTCCACAGAGGAGGCTTGGTTCACCTCACACATCCATTGAGGA
CTTGGATGAAACTTCACTCTCTTG
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