FC920242

Overview
NameFC920242
Unique NameFC920242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_DAUCA (Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.641e-104
Identity = 183/211 (86.73%), Postives = 191/211 (90.52%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+HIG AGIQ+GNACWELYCLEHGIQP+GQM SDKTVGGGDDAFNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQ+STSVVEPYNSVLSTHSLLEHTDVSVLLDNE+IYD
Sbjct:    1 MRECISVHIGQAGIQIGNACWELYCLEHGIQPNGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQISTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.641e-104
Identity = 186/211 (88.15%), Postives = 190/211 (90.05%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIHIG AGIQVGNACWELYCLEHGIQPDGQM  DKTVGGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV+VLLDNE+IYD
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.800e-104
Identity = 186/211 (88.15%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIHIG AGIQVGNACWELYCLEHGIQPDGQM SDKTVGGGDDAF TFFSETGAGKHVPRA+F+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF AV                 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNE+IYD
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFYTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.064e-103
Identity = 184/211 (87.20%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIHIG AGIQVGNACWELYCLEHGIQ DGQM  DKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV+VLLDNE+IYD
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.390e-103
Identity = 183/211 (86.73%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIHIG AGIQVGNACWELYCLEHGIQ DGQM  DKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV++LLDNE+IYD
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAILLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.390e-103
Identity = 183/211 (86.73%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIHIG AGIQVGNACWELYCLEHGIQ DGQM  DKT+GGGDDAFNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV++LLDNE+IYD
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAILLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 1.815e-103
Identity = 183/211 (86.73%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AGIQVGNACWELYCLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHSLLEHTDVSV+LDNE++YD
Sbjct:    1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVSVMLDNEAVYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 4.470e-102
Identity = 178/211 (84.36%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIH+G  GIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF++V                 VDYGKKSKLGFT+YPSPQVST+VVEPYNS+LSTHSLLEHTDV+V+LDNE+IYD
Sbjct:    1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 4.470e-102
Identity = 178/211 (84.36%), Postives = 189/211 (89.57%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIH+G  GIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF++V                 VDYGKKSKLGFT+YPSPQVST+VVEPYNS+LSTHSLLEHTDV+V+LDNE+IYD
Sbjct:    1 MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 5.838e-102
Identity = 180/211 (85.31%), Postives = 188/211 (89.10%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AGIQVGNACWELYCLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR +FLDLEPTV+DEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFTVYPSPQVST+VVEPYNSVLSTHSLLEHTDV+V+LDNE+IYD
Sbjct:    1 MREVISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCIFLDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLALDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYD 211
The following BLAST results are available for this feature:
BLAST of FC920242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBA_DAUCA1.641e-10486.73Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 S... [more]
TBA2_ORYSJ1.641e-10488.15Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]
TBA1_GOSHI2.800e-10488.15Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_ELEIN1.064e-10387.20Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA2_MAIZE1.390e-10386.73Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA1_MAIZE1.390e-10386.73Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA_CHLVU1.815e-10386.73Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]
TBA_TETTH4.470e-10284.36Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY4.470e-10284.36Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA2_CHLRE5.838e-10285.31Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]

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Properties
Property NameValue
Genbank descriptionC32005G08EF RVDevelop1 Citrus clementina cDNA clone C32005G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920242 ID=FC920242; Name=FC920242; organism=Citrus clementina; type=EST; length=686bp
GCAGAATAATCTCGCAATTCCCTGCCTCAAATCTCTAACAAAATCACACA
AGAATGAGAGAATGCATCTCAATTCACATCGGCCACGCCGGTATCCAGGT
TGGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTG
ATGGGCAAATGTTAAGTGACAAAACAGTCGGAGGCGGAGATGATGCTTTC
AACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGT
GTTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCT
ACCGTCAGTTATTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCT
GCTAACAACTTTGCCAGAGGTCACTACACAATTGGGAAAGAGATTGTGGA
TTTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTAC
AAGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTC
GGGTCTTTGCTCCTTGAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAA
ACTGGGATTTACCGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTG
AGCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGAACACACTGAC
GTTTCTGTGTTGCTTGACAATGAAAGCATCTACGAT
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