FC920242

Overview
NameFC920242
Unique NameFC920242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3443 contig Ccv1_Contig3443:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 63/225 (28.00%), Postives = 105/225 (46.67%), Query Frame = 3
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            M + + + +G  G Q+G   W+L   EH        ++ K  G  DDA ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK A+ C  LQ F + H++                  ++ +  +    VYPS +    +  PYNS+L+   L EH D  + +DN+S++D
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFD 216          
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 3
Query:   66 ISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEV-RTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVSVLLDNESIY 683
            +++H+G  G Q+  A W+    EHGI   GQ   +  +   +D  +  F +     +VPRAV +DLEP VI+ + ++  +  LF+ + +        A NN+A G Y  G+E+ +  +D I + A+N   L G L  H+V                   + KK    ++V+ +   ST VV  PYN VLS   L+E+ D  V+LDN +++
Sbjct:    8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALH 213          
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 66/238 (27.73%), Postives = 109/238 (45.80%), Query Frame = 3
Query:   60 ECISIHIGHAGIQVGNACWELYCLEHGIQPDG------------------------QMLSDKTVGGG---DDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESI 680
            E I++ +G  G QVG   W+    EHGIQ DG                        Q    +T   G   +D    FF+ + +  + PR++ +D+EP+VI   ++ +   +F+P    L +    AANN+  G Y  G E  +  L+ I +  D C  L  F +FH+V                   YG K  L  F+++PS +  S  VV+PYN++L+   L++++D + +  N+S+
Sbjct:    4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSL 238          
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  201 NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVSVLLDNESI 680
            + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G++ VD  +D + + AD    L+GF++ H++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+LDN ++
Sbjct:    1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL 162          
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  258 DLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESI 680
            DLEP V+  ++   Y+ +++PE     K+   A NN+  G Y++G+++ +   D I + AD    L+GF++ H++                   + KK    ++V+P+ Q    VV+PYNS+LS   L ++ D  V+LDN ++
Sbjct:    3 DLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGAL 144          
The following BLAST results are available for this feature:
BLAST of FC920242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBE_MOUSE8.076e-1928.00Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_CAEEL3.069e-1830.48Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_CANAL1.989e-1727.73Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBG3_MAIZE1.091e-1531.10Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG_COCHE5.070e-1329.37Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]

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Properties
Property NameValue
Genbank descriptionC32005G08EF RVDevelop1 Citrus clementina cDNA clone C32005G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920242 ID=FC920242; Name=FC920242; organism=Citrus clementina; type=EST; length=686bp
GCAGAATAATCTCGCAATTCCCTGCCTCAAATCTCTAACAAAATCACACA
AGAATGAGAGAATGCATCTCAATTCACATCGGCCACGCCGGTATCCAGGT
TGGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTG
ATGGGCAAATGTTAAGTGACAAAACAGTCGGAGGCGGAGATGATGCTTTC
AACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGT
GTTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCT
ACCGTCAGTTATTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCT
GCTAACAACTTTGCCAGAGGTCACTACACAATTGGGAAAGAGATTGTGGA
TTTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTAC
AAGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTC
GGGTCTTTGCTCCTTGAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAA
ACTGGGATTTACCGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTG
AGCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGAACACACTGAC
GTTTCTGTGTTGCTTGACAATGAAAGCATCTACGAT
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