FC920242
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19 Identity = 63/225 (28.00%), Postives = 105/225 (46.67%), Query Frame = 3 Query: 54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686 M + + + +G G Q+G W+L EH ++ K G DDA ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G + L+++RK A+ C LQ F + H++ ++ + + VYPS + + PYNS+L+ L EH D + +DN+S++D Sbjct: 1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFD 216
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18 Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 3 Query: 66 ISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEV-RTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVV-EPYNSVLSTHSLLEHTDVSVLLDNESIY 683 +++H+G G Q+ A W+ EHGI GQ + + +D + F + +VPRAV +DLEP VI+ + ++ + LF+ + + A NN+A G Y G+E+ + +D I + A+N L G L H+V + KK ++V+ + ST VV PYN VLS L+E+ D V+LDN +++ Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALH 213
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17 Identity = 66/238 (27.73%), Postives = 109/238 (45.80%), Query Frame = 3 Query: 60 ECISIHIGHAGIQVGNACWELYCLEHGIQPDG------------------------QMLSDKTVGGG---DDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESI 680 E I++ +G G QVG W+ EHGIQ DG Q +T G +D FF+ + + + PR++ +D+EP+VI ++ + +F+P L + AANN+ G Y G E + L+ I + D C L F +FH+V YG K L F+++PS + S VV+PYN++L+ L++++D + + N+S+ Sbjct: 4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSL 238
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15 Identity = 51/164 (31.10%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 201 NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVSVLLDNESI 680 + FF + +PR++ +DLEP VI+ ++ YR L++ E + + A NN+A G++ G++ VD +D + + AD L+GF++ H++ Y KK ++V+P+ QV TS VV+PYNS+L+ L + D V+LDN ++ Sbjct: 1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL 162
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13 Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 3 Query: 258 DLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESI 680 DLEP V+ ++ Y+ +++PE K+ A NN+ G Y++G+++ + D I + AD L+GF++ H++ + KK ++V+P+ Q VV+PYNS+LS L ++ D V+LDN ++ Sbjct: 3 DLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGAL 144 The following BLAST results are available for this feature:
BLAST of FC920242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 415
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920242 ID=FC920242; Name=FC920242; organism=Citrus clementina; type=EST; length=686bpback to top |