FC920247

Overview
NameFC920247
Unique NameFC920247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_NOCFA (Chaperone protein htpG OS=Nocardia farcinica GN=htpG PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.151e-23
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  115 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            M    E   FQAE +QLL L+I++ YSNK+ FLRELISN+SDALDK+R ES  DK       +L I +  DK N  L++ D+GIGM++A++V+ +GT+A+SGT E    L+
Sbjct:    1 MTEHVEQLEFQAETHQLLELMIHSVYSNKDTFLRELISNASDALDKLRLESFKDKDLHVDTADLHIELEVDKDNRILTVRDNGIGMSRAEVVDLIGTLAKSGTAELRRKLS 111          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_CHLPD (Chaperone protein htpG OS=Chlorobium phaeobacteroides (strain DSM 266) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.151e-23
Identity = 53/103 (51.46%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  136 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 444
            + ++AE+ QLL LI+++ Y++ EIFLRELISN+SDAL K+RF +LTD+S +++   L I I  D   +T+ I D+G GMT+ +L+ NLGT+ARSGT  F++AL
Sbjct:   12 YEYKAEMKQLLELIVHSLYTHPEIFLRELISNASDALSKVRFNALTDESIINSDAGLAIRITLDPEAHTIVIEDNGTGMTEEELILNLGTVARSGTLGFLQAL 114          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_SALTO (Chaperone protein htpG OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.728e-23
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  127 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 459
            +ET  FQAE  QLL L++++ YSNK++FLRELISN+SDALDK+R  SL DK       +L I I  D    TL++ D+GIGM++ ++V  +GTIA+SGT E +  L   AD
Sbjct:    3 SETLEFQAEARQLLQLMVHSIYSNKDVFLRELISNASDALDKLRLASLRDKDLDVDTADLHIAIEIDPDARTLTVRDNGIGMSRDEVVQVIGTIAKSGTAELLRTLRESAD 113          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_DESPS (Chaperone protein htpG OS=Desulfotalea psychrophila GN=htpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.728e-23
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 1
Query:  121 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            +E + + FQAE  +LL ++IN+ Y+ +++F+RELISNS+DAL+K+R E+LT +  LD    L I I  D+  +TL+I DSGIGMT+ +LVNNLG IA SG+  F   LA
Sbjct:    2 TEAKNYEFQAETKKLLDIVINSLYTERDVFVRELISNSADALEKMRHEALTCQEVLDEDLPLEITIDLDEEAHTLTISDSGIGMTEQELVNNLGVIAHSGSGSFYAELA 110          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_ORITB (Chaperone protein htpG OS=Orientia tsutsugamushi (strain Boryong) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.787e-23
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1
Query:  130 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 456
            ET+ F AE+ ++L L+I+T Y+NK+IFLRELISN+SDA DK+R+ S ++   L  + +  I +  DK    + + D+GIGM K DL  NLGTIA SGT++F+E L   A
Sbjct:    4 ETYKFDAEVGKVLHLVIHTLYTNKKIFLRELISNASDACDKLRYLSQSNAELLQGESDFKITVSMDKEKRYIILQDNGIGMNKEDLTQNLGTIASSGTQKFLEQLGNDA 112          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_OCEIH (Chaperone protein htpG OS=Oceanobacillus iheyensis GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.787e-23
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 1
Query:  142 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEF 432
            F+AE  +LL ++IN+ YS +E+FLRELISN+SDA+DKI +++LTD S        +I I P+K   TL+++D+GIGMTK +L NNLG IA+SG+  F
Sbjct:    6 FKAESQKLLDMVINSIYSQREVFLRELISNASDAIDKIYYKALTDDSLSFDVDNYYIKITPNKEERTLTVVDTGIGMTKEELENNLGVIAKSGSHTF 102          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_CHLTE (Chaperone protein htpG OS=Chlorobium tepidum GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.787e-23
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  121 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 444
            S    F ++AE+ QLL+LI+++ Y++ EIFLRELISN+SDAL K RF  L+    LD   +L I I  DK + +  I D+GIGM++ +L++NLGT+A SGT  FMEAL
Sbjct:    7 SSVREFEYKAEMKQLLNLIVHSLYTHPEIFLRELISNASDALGKARFRMLSSDEGLDKSGDLKITITVDKESGSFVIEDTGIGMSEEELISNLGTVASSGTLGFMEAL 114          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_BACLD (Chaperone protein htpG OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.787e-23
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = 1
Query:  142 FQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFME 438
            F+AE  +LL ++IN+ YS KE+FLRELISN+SDA+DKI +++LTD S    + + +I I  DK N TL+I D+GIGMTK +L  +LGTIA+SG+  F +
Sbjct:    6 FKAESKRLLDIMINSIYSQKEVFLRELISNASDAIDKIYYKALTDDSLTFNKDDYYIKISADKENRTLTIADTGIGMTKEELEEHLGTIAKSGSLAFKQ 104          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_VIBSL (Chaperone protein htpG OS=Vibrio splendidus (strain LGP32) GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.148e-22
Identity = 52/106 (49.06%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  130 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RF++L++        +L + +  +   NTL+I D+GIGM++ +++ +LGTIA+SGT +F   L+
Sbjct:   10 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFQALSNGDLYQGDADLGVKLSFNAEANTLTISDNGIGMSRDNVIEHLGTIAKSGTADFFSKLS 115          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_RHILO (Chaperone protein htpG OS=Rhizobium loti GN=htpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.148e-22
Identity = 49/111 (44.14%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  127 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 459
            TET AF+A++++LL +++++ YS+K++FLRELISN++DA +K+RFE+++    L   P+  I I  D  N  +++ D+GIGM++ D+   LGTIARSGT+ F+E + +G +
Sbjct:    8 TETRAFEADVSRLLHMMVHSVYSDKDVFLRELISNAADACEKLRFEAVSRPELLGDDPKPRISISADPDNKEITVEDNGIGMSRDDMAEALGTIARSGTRAFIERVGSGTE 118          
The following BLAST results are available for this feature:
BLAST of FC920247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_NOCFA5.151e-2349.55Chaperone protein htpG OS=Nocardia farcinica GN=ht... [more]
HTPG_CHLPD5.151e-2351.46Chaperone protein htpG OS=Chlorobium phaeobacteroi... [more]
HTPG_SALTO6.728e-2350.45Chaperone protein htpG OS=Salinispora tropica (str... [more]
HTPG_DESPS6.728e-2350.46Chaperone protein htpG OS=Desulfotalea psychrophil... [more]
HTPG_ORITB8.787e-2348.62Chaperone protein htpG OS=Orientia tsutsugamushi (... [more]
HTPG_OCEIH8.787e-2352.58Chaperone protein htpG OS=Oceanobacillus iheyensis... [more]
HTPG_CHLTE8.787e-2350.93Chaperone protein htpG OS=Chlorobium tepidum GN=ht... [more]
HTPG_BACLD8.787e-2353.54Chaperone protein htpG OS=Bacillus licheniformis (... [more]
HTPG_VIBSL1.148e-2249.06Chaperone protein htpG OS=Vibrio splendidus (strai... [more]
HTPG_RHILO1.148e-2244.14Chaperone protein htpG OS=Rhizobium loti GN=htpG P... [more]

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Properties
Property NameValue
Genbank descriptionC32005H02EF RVDevelop1 Citrus clementina cDNA clone C32005H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920247 ID=FC920247; Name=FC920247; organism=Citrus clementina; type=EST; length=465bp
AACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTCGC
TTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGAAC
GGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCT
GAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAACAA
GGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATA
AGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCA
GAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCTAT
TATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTG
GTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCT
GGGGCGGATGTGAGC
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