FC920247

Overview
NameFC920247
Unique NameFC920247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920247_ssr21 microsatellite FC920247_ssr21:21..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10211 contig Ccv1_Contig10211:3..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_NITEC (Chaperone protein htpG OS=Nitrosomonas eutropha (strain C91) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 59/109 (54.13%), Postives = 84/109 (77.06%), Query Frame = 1
Query:  118 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 444
            A   E   FQAE  QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L+D +  ++ P+L I I  DK   T++I D+GIGM++ ++++N+GTIA+SGT+EF+++L
Sbjct:    4 AENVEHLNFQAEAKQLLRLMIHSLYSNKEIFLRELISNASDAADKLRFEGLSDTALYESDPDLKIRIAYDKEARTITISDNGIGMSRQEVIDNIGTIAKSGTREFIDSL 112          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRW (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Welgevonden) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = 1
Query:  127 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 456
            +E   F AE+ ++L L+I++ Y+NK+IFLRELISN+SDA DK+R++SL+++  +DA  EL I I  DK  N L I D+GIGM + DL+NNLGTIA SGT++F++A+ +GA
Sbjct:    7 SERLKFDAEVGKVLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAGSELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINSGA 116          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRG (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Gardel) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 59/110 (53.64%), Postives = 85/110 (77.27%), Query Frame = 1
Query:  127 TETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGA 456
            +E   F AE+ ++L L+I++ Y+NK+IFLRELISN+SDA DK+R++SL+++  +DA  EL I I  DK  N L I D+GIGM + DL+NNLGTIA SGT++F++A+ +GA
Sbjct:    7 SERLKFDAEVGKVLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAGSELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINSGA 116          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  115 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            M+++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA DK+RFE L      +  PEL I I  DK   T++I D+GIGM++ ++V+++GTIA+SGTK F E L+
Sbjct:    1 MSAQKETLGFQTEVKQLLKLMIHSLYSNKEIFLRELISNASDAADKLRFEGLAKPELFENDPELKIRIAFDKDARTITIADNGIGMSRDEVVSHIGTIAKSGTKSFFEQLS 111          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF5 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  115 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            MA+  ET  FQ EINQLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L D + L    EL + +  D    T+++ D+GIGM + +++ N+GTIA+SGT+EF E L+
Sbjct:    1 MAASKETMQFQTEINQLLQLMIHSLYSNKEIFLRELISNASDACDKLRFEALADPALLTGDSELKVEVDFDPEAGTITVRDNGIGMNRDEVIANIGTIAKSGTREFFERLS 111          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF2 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  115 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            MA+  ET  FQ EINQLL L+I++ YSNKEIFLRELISN+SDA DK+RFE+L D + L    EL + +  D    T+++ D+GIGM + +++ N+GTIA+SGT+EF E L+
Sbjct:    1 MAASKETMQFQTEINQLLQLMIHSLYSNKEIFLRELISNASDACDKLRFEALADPALLTGDSELKVEVDFDPEAGTITVRDNGIGMNRDEVIANIGTIAKSGTREFFERLS 111          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_RALME (Chaperone protein htpG OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 1
Query:  115 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            M +  ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA DK+RFE++ + + L+   +L I I  D    TL I D+GIGM++ + + NLGTIARSGTKEF + L+
Sbjct:    1 MTAPHETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPALLENDADLAIRIEADPAARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQQLS 111          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_COXBN (Chaperone protein htpG OS=Coxiella burnetii (strain Dugway 5J108-111) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 59/113 (52.21%), Postives = 87/113 (76.99%), Query Frame = 1
Query:  109 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            +S+  ++ET +F+AE+ QLL L+ ++ YSNKEIFLRELISNSSDA DK+R+++L+D +  +   +L I I  DK N T++I D+GIGM++ +++ NLGTIA+SGT+ F E LA
Sbjct:    1 MSLQPQSETLSFEAEVKQLLHLVAHSLYSNKEIFLRELISNSSDAADKLRYQALSDAALYENDADLKIWIDFDKDNRTITIRDNGIGMSREEVIENLGTIAKSGTRAFRELLA 113          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_TREDE (Chaperone protein htpG OS=Treponema denticola GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 61/105 (58.10%), Postives = 83/105 (79.05%), Query Frame = 1
Query:  136 FAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 450
            + F+ E+NQLLSLII++ YSNKEIFLREL+SN+SDALDK+++ +L+D++    + E  I I  D T NTL++ D+G+GM + DL NNLGTIARSGTK F++ LAA
Sbjct:    4 YKFETEVNQLLSLIIHSLYSNKEIFLRELVSNASDALDKLKYLTLSDEAYKQIKFEPRIDICFDDTANTLTVRDTGLGMNEEDLKNNLGTIARSGTKAFLDQLAA 108          
BLAST of FC920247 vs. ExPASy Swiss-Prot
Match: HTPG_COXBU (Chaperone protein htpG OS=Coxiella burnetii GN=htpG PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 59/113 (52.21%), Postives = 86/113 (76.11%), Query Frame = 1
Query:  109 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 447
            +S+  + ET +F+AE+ QLL L+ ++ YSNKEIFLRELISNSSDA DK+R+++L+D +  +   +L I I  DK N T++I D+GIGM++ +++ NLGTIA+SGT+ F E LA
Sbjct:    1 MSLQPQAETLSFEAEVKQLLHLVAHSLYSNKEIFLRELISNSSDAADKLRYQALSDAALYENDADLKIWIDFDKDNRTITIRDNGIGMSREEVIENLGTIAKSGTRAFRELLA 113          
The following BLAST results are available for this feature:
BLAST of FC920247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_NITEC1.547e-2754.13Chaperone protein htpG OS=Nitrosomonas eutropha (s... [more]
HTPG_EHRRW1.547e-2753.64Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HTPG_EHRRG1.547e-2753.64Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HTPG_CHRVO1.547e-2754.05Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_ACIF51.547e-2754.05Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_ACIF21.547e-2754.05Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_RALME2.021e-2754.05Chaperone protein htpG OS=Ralstonia metallidurans ... [more]
HTPG_COXBN2.021e-2752.21Chaperone protein htpG OS=Coxiella burnetii (strai... [more]
HTPG_TREDE2.640e-2758.10Chaperone protein htpG OS=Treponema denticola GN=h... [more]
HTPG_COXBU2.640e-2752.21Chaperone protein htpG OS=Coxiella burnetii GN=htp... [more]

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Properties
Property NameValue
Genbank descriptionC32005H02EF RVDevelop1 Citrus clementina cDNA clone C32005H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920247 ID=FC920247; Name=FC920247; organism=Citrus clementina; type=EST; length=465bp
AACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTTCGC
TTCCAAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGAAC
GGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGGCT
GAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAACAA
GGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGATA
AGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAACCA
GAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCTAT
TATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCTTG
GTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTGCT
GGGGCGGATGTGAGC
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