FC920254

Overview
NameFC920254
Unique NameFC920254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK1_MOUSE (Dual specificity protein kinase CLK1 OS=Mus musculus GN=Clk1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQ-ERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD EGH +   G+ L+ RY+I+  +GEG FG+V+EC D +    RVA+K+V+++ +Y +AA  EI VL+HL   D   +  CVQ+  WF++R HIC
Sbjct:  141 EDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKVGGRRVAVKIVKNVDRYCEAAQSEIQVLEHLNTTDPHSTFRCVQMLEWFEHRGHIC 237          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: DOA_DROME (Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.496e-19
Identity = 40/99 (40.40%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  350 PRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            P   DD +GH +++ G+ L  RYKI++ +GEGTFGRV++  D +    +A+K+++++ KYR+AA +EI+ L+ +A+ D      CV++ +WFDY  H+C
Sbjct:  457 PVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMC 555          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK4_MOUSE (Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQE-RVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD EGH +   G+ L  RY+I+  +GEG FG+V+EC D       VA+K+V+++ +YR+AA  EI VL+HL   D      CVQ+  WFD+  H+C
Sbjct:  140 EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVC 236          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK4_HUMAN (Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQE-RVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD EGH +   G+ L  RY+I+  +GEG FG+V+EC D       VA+K+V+++ +YR+AA  EI VL+HL   D      CVQ+  WFD+  H+C
Sbjct:  140 EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVC 236          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLK1_HUMAN (Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  359 DDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQER-VAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            +DD EGH +   G+ L+ RY+I+  +GEG FG+V+EC D +   R VA+K+V+++ +Y +AA  EI VL+HL   D   +  CVQ+  WF++  HIC
Sbjct:  142 EDDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHIC 238          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGS---SHCVQIRNWFDYRNHIC 646
            DD   +Y   +GE L  RYK+L  +G GTF  V+ECWD  +  +VAIK+VRS +KY + A++EID+L++L K         SHC+++ + F +++HIC
Sbjct:  572 DDENDYYKVQVGEYLNNRYKVLCTVGSGTFSTVVECWDTNSSGQVAIKIVRSAKKYTEDALVEIDILRNLEKTGNSNGKYLSHCIRLLDSFLFKDHIC 669          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: KNS1_YEAST (Dual specificity protein kinase KNS1 OS=Saccharomyces cerevisiae GN=KNS1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  365 DREGHYVFNLGENLTP--RYKILSKMGEGTFGRVLECWDRQTQER-VAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            D++GHYV+   +      R+ +   +G+GTFG+VL+C D + +   VA+KV+R++ +YR+AA  E+ +LQ +  ND  G   C+ +R  FDY+NHIC
Sbjct:  294 DKDGHYVYQENDIFGSGGRFVVKDLLGQGTFGKVLKCIDNKYEPNYVAVKVIRAVDRYREAAKTELRILQTILNNDPQGQFQCLLLRECFDYKNHIC 390          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: DYRK4_MOUSE (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Mus musculus GN=Dyrk4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 32/95 (33.68%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            DD  G Y+  L +++  RY++L  +G+G+FG+V +C D +  E VA+K++R+ +++   A++E+ +L+ L + DK  + + V ++++F +RNH+C
Sbjct:  201 DDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNNHNVVHMKDFFYFRNHLC 295          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: DYRK4_HUMAN (Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Homo sapiens GN=DYRK4 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 33/95 (34.74%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            DD  G Y+  L +++  RY++L  +G+G+FG+V +C D +  E VA+K++R+ +++   A++E+ +L+ L K DK  + + V ++++F +RNH C
Sbjct:   86 DDEHGFYLKVLHDHIAYRYEVLETIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHQQALMELKILEALRKKDKDNTYNVVHMKDFFYFRNHFC 180          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: DYRK3_RAT (Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Rattus norvegicus GN=Dyrk3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 35/95 (36.84%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            DD +G Y+    ++L  RY++L  +G+G+FG+V   +D + ++ VA+K+VR+ +++   A  EI +L+HL K DK GS + + +   F +RNH+C
Sbjct:  190 DDADGAYIHVPRDHLAYRYEVLKIIGKGSFGQVARVYDHKLRQYVALKMVRNEKRFHRQAAEEIRILEHLKKQDKTGSMNVIHMLESFTFRNHVC 284          
The following BLAST results are available for this feature:
BLAST of FC920254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CLK1_MOUSE1.121e-1944.33Dual specificity protein kinase CLK1 OS=Mus muscul... [more]
DOA_DROME2.496e-1940.40Serine/threonine-protein kinase Doa OS=Drosophila ... [more]
CLK4_MOUSE5.561e-1943.30Dual specificity protein kinase CLK4 OS=Mus muscul... [more]
CLK4_HUMAN5.561e-1943.30Dual specificity protein kinase CLK4 OS=Homo sapie... [more]
CLK1_HUMAN5.561e-1943.30Dual specificity protein kinase CLK1 OS=Homo sapie... [more]
CLKA_DICDI7.263e-1942.86Probable serine/threonine-protein kinase clkA OS=D... [more]
KNS1_YEAST3.374e-1640.21Dual specificity protein kinase KNS1 OS=Saccharomy... [more]
DYRK4_MOUSE2.187e-1533.68Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK4_HUMAN2.856e-1534.74Dual specificity tyrosine-phosphorylation-regulate... [more]
DYRK3_RAT2.418e-1436.84Dual specificity tyrosine-phosphorylation-regulate... [more]

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Properties
Property NameValue
Genbank descriptionC32005H10EF RVDevelop1 Citrus clementina cDNA clone C32005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920254 ID=FC920254; Name=FC920254; organism=Citrus clementina; type=EST; length=648bp
TCGCCGGGGAAGCGCGAAACAGACAATCGTCACATTCGCCCAAAATATTC
CCCCAATGCATAGGAACCCTAATTTCCGAATGCTACCGTCATATCATCTC
TCGCACTCTTATAATTCTGTTCGAATTTTCTACTAATATTCAAAACTATT
GAGGAGTTTTGTGCTGCAGATACTTAGGTTAAAAATCATACAAAGGAATA
ATAAATAGCAAACGATGATGGAGCAGGAGCGAACCACTAAACGACGTCGG
CTCGCTTGGGACGTGGCGCCATCGGAGGCAGAGGCGCAACGGGCTCTGGT
GGTGGGCCATGAAGGGGCTACGGCGGCGGCTGCAAAACACGTGTCGCCGC
CGAGAAGGGACGATGATCGTGAGGGACATTACGTTTTTAATCTCGGCGAA
AATCTCACCCCCAGATATAAAATACTTAGCAAAATGGGTGAAGGCACATT
TGGCCGTGTTTTGGAATGTTGGGACCGTCAAACACAGGAGCGTGTGGCAA
TCAAGGTAGTCAGAAGTATACGCAAGTACCGTGATGCTGCAATGATTGAA
ATCGATGTTCTTCAGCATCTTGCTAAAAATGACAAAGGCGGCAGCTCACA
TTGTGTGCAGATTCGAAATTGGTTTGATTATCGCAATCATATTTGTAT
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