FC920254

Overview
NameFC920254
Unique NameFC920254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: DYRK1_DICDI (Probable serine/threonine-protein kinase dyrk1 OS=Dictyostelium discoideum GN=dyrk1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 30/95 (31.58%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            DD    Y+  +GE    R++I+S +G+G+FG+V++ +D   +E VAIK++++   + + A+IEI +L+ +   D       +++++ F +RNH+C
Sbjct:  286 DDENADYIVRIGEVFVDRFEIISSLGKGSFGQVVKAFDSVLKEYVAIKIIKNKVPFYNQALIEIRLLELMNNKDPEDQYKIIKLKHHFKFRNHLC 380          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: MNB_DROME (Serine/threonine-protein kinase minibrain OS=Drosophila melanogaster GN=mnb PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 31/95 (32.63%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            DD    Y+   GE    RY+I S +G+G+FG+V++ +D + Q  VAIK++++ + + + A IE+ +L+ + + D     + V+++  F +RNH+C
Sbjct:  146 DDDNHDYIIKNGEKFLDRYEIDSLIGKGSFGQVVKAYDHEEQCHVAIKIIKNKKPFLNQAQIEVKLLEMMNRADAENKYYIVKLKRHFMWRNHLC 240          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: DYRK2_DICDI (Probable serine/threonine-protein kinase dyrk2 OS=Dictyostelium discoideum GN=dyrk2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 30/94 (31.91%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHI 643
            D+  G Y     +++  R++I+S +G+G+F +V++ +D +T E VA+K++R+ +++ + A+ EI +L++L  ND   ++  V + N+F +RNH+
Sbjct:  587 DNDIGEYKVVERDHIAYRFEIVSILGQGSFCQVVKGYDYKTGEMVALKILRNQKRFHNQALTEIKILEYLKTNDPNSTASIVHLNNYFYFRNHL 680          
BLAST of FC920254 vs. ExPASy Swiss-Prot
Match: MBK1_CAEBR (Dual specificity tyrosine-phosphorylation-regulated kinase mbk-1 OS=Caenorhabditis briggsae GN=mbk-1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 35/97 (36.08%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  362 DDREGHYVFNLGENLTPRYKILSK--MGEGTFGRVLECWDRQTQERVAIKVVRSIRKYRDAAMIEIDVLQHLAKNDKGGSSHCVQIRNWFDYRNHIC 646
            DD+   Y+   GE    RY ILS   +G+G+FG+V + +D  T+E VAIK++++ + + D A IEI +L+    +DK    + V ++  F +R H+C
Sbjct:  347 DDQNYDYILKNGEIFDKRYVILSDTPVGKGSFGQVTKAYDTVTKEEVAIKIIKNKKTFFDQAQIEIHLLELTNAHDKDNKYNIVTLKGHFVHRAHLC 443          
The following BLAST results are available for this feature:
BLAST of FC920254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DYRK1_DICDI3.860e-1231.58Probable serine/threonine-protein kinase dyrk1 OS=... [more]
MNB_DROME8.600e-1232.63Serine/threonine-protein kinase minibrain OS=Droso... [more]
DYRK2_DICDI3.268e-1131.91Probable serine/threonine-protein kinase dyrk2 OS=... [more]
MBK1_CAEBR5.574e-1136.08Dual specificity tyrosine-phosphorylation-regulate... [more]

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Properties
Property NameValue
Genbank descriptionC32005H10EF RVDevelop1 Citrus clementina cDNA clone C32005H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920254 ID=FC920254; Name=FC920254; organism=Citrus clementina; type=EST; length=648bp
TCGCCGGGGAAGCGCGAAACAGACAATCGTCACATTCGCCCAAAATATTC
CCCCAATGCATAGGAACCCTAATTTCCGAATGCTACCGTCATATCATCTC
TCGCACTCTTATAATTCTGTTCGAATTTTCTACTAATATTCAAAACTATT
GAGGAGTTTTGTGCTGCAGATACTTAGGTTAAAAATCATACAAAGGAATA
ATAAATAGCAAACGATGATGGAGCAGGAGCGAACCACTAAACGACGTCGG
CTCGCTTGGGACGTGGCGCCATCGGAGGCAGAGGCGCAACGGGCTCTGGT
GGTGGGCCATGAAGGGGCTACGGCGGCGGCTGCAAAACACGTGTCGCCGC
CGAGAAGGGACGATGATCGTGAGGGACATTACGTTTTTAATCTCGGCGAA
AATCTCACCCCCAGATATAAAATACTTAGCAAAATGGGTGAAGGCACATT
TGGCCGTGTTTTGGAATGTTGGGACCGTCAAACACAGGAGCGTGTGGCAA
TCAAGGTAGTCAGAAGTATACGCAAGTACCGTGATGCTGCAATGATTGAA
ATCGATGTTCTTCAGCATCTTGCTAAAAATGACAAAGGCGGCAGCTCACA
TTGTGTGCAGATTCGAAATTGGTTTGATTATCGCAATCATATTTGTAT
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