FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_ANASP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabaena sp. (strain PCC 7120) GN=hemL PE=3 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.127e-59
Identity = 110/151 (72.85%), Postives = 127/151 (84.11%), Query Frame = 1
Query:  193 NFTLKN--SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            N T+K   S+E F  A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPAI GHA   V+ AL + ++KGTSFGAP  LENVLAEMVI+AVPSIEMVRFVNSGTEACM VLRL RAFT RE++I  EG YHGHA
Sbjct:    3 NTTIKTTKSQEIFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPDVIGALHDALEKGTSFGAPSFLENVLAEMVIAAVPSIEMVRFVNSGTEACMAVLRLMRAFTNREKVIKFEGCYHGHA 153          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNS9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9902) GN=hemL PE=3 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 5.390e-59
Identity = 106/143 (74.13%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S+  F  A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG + WD+DGN+YIDY+GSWGPAI GHA  +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:    6 SQAIFGAAQGLMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFEGCYHGHA 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNR3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain RCC307) GN=hemL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.390e-59
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S+  F  A++LMPGGVNSPVRAF+SVGGQPIVFD V+G++ WD+DGN YIDY+GSWGPAI GHA+ +V+ AL + + KGTSFGAPC LEN LAEMVI+AVPS+EMVRFVNSGTEACM VLRL RA+TGRE++I  EG YHGHA
Sbjct:   12 SDALFTAAQQLMPGGVNSPVRAFRSVGGQPIVFDRVEGAYAWDVDGNRYIDYIGSWGPAICGHANPEVIEALQQALTKGTSFGAPCALENTLAEMVINAVPSVEMVRFVNSGTEACMAVLRLMRAYTGREKVIKFEGCYHGHA 154          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNPX (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain WH8102) GN=hemL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.390e-59
Identity = 106/143 (74.13%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S+  F  A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG + WD+DGN+YIDY+GSWGPAI GHA  +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:    6 SQAIFGAAQGLMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFEGCYHGHA 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROMA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus GN=hemL PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.040e-59
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 1
Query:  196 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            F   NS+  F+ A+ELMPGGV+SPVRAFKSV G PIVFD VKG++ WD+DGN +IDYVGSWGPAI GH+  +V+A+L E ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:    5 FNTSNSQAVFHAAQELMPGGVSSPVRAFKSVNGDPIVFDRVKGAYAWDLDGNRFIDYVGSWGPAICGHSHPEVIASLQEALEKGTSFGAPCELENKLAEMVIEAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKLIKFEGCYHGHA 152          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNP6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hemL PE=1 SV=4)

HSP 1 Score: 226.483 bits (576), Expect = 9.195e-59
Identity = 109/148 (73.65%), Postives = 123/148 (83.11%), Query Frame = 1
Query:  196 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            F    S+E F  A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA  +V+ AL   M+KGTSFGAPC LENVLAEMVI AVPSIEMVRFVNSGTEACM VLRL RA+TGR++II  EG YHGHA
Sbjct:    7 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVIDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHA 154          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNE7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus elongatus (strain PCC 7942) GN=hemL PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 9.195e-59
Identity = 109/148 (73.65%), Postives = 123/148 (83.11%), Query Frame = 1
Query:  196 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            F    S+E F  A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA  +V+ AL   M+KGTSFGAPC LENVLAEMVI AVPSIEMVRFVNSGTEACM VLRL RA+TGR++II  EG YHGHA
Sbjct:    7 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVIDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHA 154          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_CYAP7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 7424) GN=hemL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.195e-59
Identity = 106/149 (71.14%), Postives = 125/149 (83.89%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            +F    SEE F  A++LMPGGV+SPVRAFKSVGGQPIVFD V+G+++WD+D N+YIDYVG+WGPAI GHA   V++AL + + KGTSFGAPC+ EN+LAEMVI AVPSIEMVRFVNSGTEACM VLRL RA+T RE+II  EG YHGHA
Sbjct:    6 SFKTTKSEEIFTAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVEGAYIWDVDNNQYIDYVGTWGPAICGHAHPDVISALHKALDKGTSFGAPCMQENILAEMVIDAVPSIEMVRFVNSGTEACMSVLRLMRAYTNREKIIKFEGCYHGHA 154          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROM3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemL PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.494e-58
Identity = 104/143 (72.73%), Postives = 123/143 (86.01%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S+  F+ A+ LMPGGV+SPVRAF+SVGGQPIVFD VKG++ WD+DGN +IDY+GSWGPAI GHA  +V+AAL + ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:    6 SQAIFSAAQRLMPGGVSSPVRAFRSVGGQPIVFDRVKGAYAWDVDGNRFIDYIGSWGPAICGHAHPEVIAALQDALEKGTSFGAPCELENQLAEMVIDAVPSVEMVRFVNSGTEACMSVLRLMRAFTGRDKLIKFEGCYHGHA 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNJB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. GN=hemL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.017e-57
Identity = 102/149 (68.46%), Postives = 123/149 (82.55%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            +F    S++ F  A+ LMPGGV+SPVRAFKSVGG P+VFD V G++ WD+DGN+YIDY+GSWGPAI+GHA  +V+ AL   ++KGTSFGAPC+LEN LAE VI AVPS+EMVRFVNSGTEACM VLRL RA+TGRE++I  EG YHGHA
Sbjct:    9 SFNTTRSKQVFARAQSLMPGGVSSPVRAFKSVGGDPVVFDRVSGAYAWDVDGNQYIDYIGSWGPAIVGHAHPEVIEALRRALEKGTSFGAPCVLENELAERVIEAVPSVEMVRFVNSGTEACMAVLRLMRAYTGREKVIKFEGCYHGHA 157          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_ANASP4.127e-5972.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabae... [more]
GSA_SYNS95.390e-5974.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNR35.390e-5972.73Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNPX5.390e-5974.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROMA7.040e-5971.62Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNP69.195e-5973.65Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNE79.195e-5973.65Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_CYAP79.195e-5971.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_PROM33.494e-5872.73Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNJB1.017e-5768.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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