FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROMM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.017e-57
Identity = 103/143 (72.03%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S+  F+ A+ LMPGGV+SPVRAF+SVGGQPIVFD VKG++ WD+DGN +IDY+GSWGPAI GHA  +V+ AL + ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:    6 SQAIFSAAQRLMPGGVSSPVRAFRSVGGQPIVFDRVKGAYAWDVDGNRFIDYIGSWGPAICGHAHPEVIVALQDALEKGTSFGAPCELENQLAEMVIDAVPSVEMVRFVNSGTEACMSVLRLMRAFTGRDKLIKFEGCYHGHA 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNJA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hemL PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.734e-57
Identity = 101/150 (67.33%), Postives = 123/150 (82.00%), Query Frame = 1
Query:  190 KNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            ++F    S + F  A++LMPGGV+SPVRAFKSVGG P+VFD V G++ WD+DGN+YIDY+GSWGPAI+GHA  +V+ AL   ++KGTSFGAPC+LEN LAE VI AVPS+EMVRFVNSGTEACM  LRL RA+TGRE++I  EG YHGHA
Sbjct:    8 RSFNTSRSRQIFARAQQLMPGGVSSPVRAFKSVGGDPVVFDRVAGAYAWDVDGNQYIDYIGSWGPAIVGHAHPEVIEALRRALEKGTSFGAPCVLENELAERVIEAVPSVEMVRFVNSGTEACMAALRLMRAYTGREKVIKFEGCYHGHA 157          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROM4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemL PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.265e-57
Identity = 105/148 (70.95%), Postives = 121/148 (81.76%), Query Frame = 1
Query:  196 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            F    S+  FN A++LMPGGV+SPVRAFKSV G PIVFD VKG + WD+DGN +IDYVGSWGPAI GH+  +V+AAL E ++KGTSFGAPC LEN LA MVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:    5 FNTNLSQAVFNAAQDLMPGGVSSPVRAFKSVNGDPIVFDRVKGPYAWDLDGNRFIDYVGSWGPAICGHSHPEVIAALQEALEKGTSFGAPCELENKLAGMVIEAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKLIKFEGCYHGHA 152          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_CHLRE (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Chlamydomonas reinhardtii GN=GSA PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.468e-56
Identity = 103/145 (71.03%), Postives = 121/145 (83.45%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            K SEE F  A+EL+PGGVNSPVRAF+SVGG PIVFD VKG++ WD+DGN+YIDYVGSWGPAI GH +D+V  AL   + KGTSFGAPC LENVLA+MVI  VPS+EMVRFV+SGTEAC+ VLRL RA+TGRE+++   G YHGHA
Sbjct:   40 KRSEEIFKEAQELLPGGVNSPVRAFRSVGGGPIVFDRVKGAYCWDVDGNKYIDYVGSWGPAICGHGNDEVNNALKAQIDKGTSFGAPCELENVLAKMVIDRVPSVEMVRFVSSGTEACLSVLRLMRAYTGREKVLKFTGCYHGHA 184          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_GLOVI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Gloeobacter violaceus GN=hemL PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.502e-50
Identity = 89/148 (60.14%), Postives = 115/148 (77.70%), Query Frame = 1
Query:  196 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            F    S   F  A++LMPGGVNSPVRAFKSVG +P+  +  +G+++WD+DGN YI+Y+ +WGP+I+GH+  +V++AL E + KGTS+GAP  LEN +A  VI A+P++EMVRFVNSGTEA M  LRLARAFTGRE+II  EG YHGHA
Sbjct:    6 FQTAQSHRLFAEAQQLMPGGVNSPVRAFKSVGSEPVFIERAEGAYLWDVDGNRYIEYINTWGPSIVGHSHPEVISALREALPKGTSYGAPTRLENQMARTVIDAIPAVEMVRFVNSGTEATMSALRLARAFTGREKIIKFEGCYHGHA 153          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_BACHD (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus halodurans GN=hemL2 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.331e-49
Identity = 97/146 (66.44%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  199 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            T + S  AFN AK LMPGGVNSPVRAFKSV   P+  +  KG++++DIDGNEYIDYV SWGP I+GHADDQV+  L ET +KGTSFGAP  LE  LAE+VI  VPSIE+VR VNSGTEA M  LRLAR +TGR +I+  EG YHGH
Sbjct:    3 TFEKSSAAFNRAKPLMPGGVNSPVRAFKSVNMDPVFMERGKGANIYDIDGNEYIDYVLSWGPLILGHADDQVVEKLKETTEKGTSFGAPSELETKLAELVIERVPSIEVVRMVNSGTEATMSALRLARGYTGRNKILKFEGCYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SOLUE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Solibacter usitatus (strain Ellin6076) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.377e-46
Identity = 89/146 (60.96%), Postives = 109/146 (74.66%), Query Frame = 1
Query:  199 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            T   SEE F  A E +PGGVNSPVRAF+SVGGQP+     +GSH++D+DGNEYIDYVGSWGP I+GH   ++LAAL   ++ GTSFGAP   E  LA+ +I AVPS+EMVR VNSGTEA M  +R+AR FTGR+ ++  EG YHGH
Sbjct:    2 THTKSEELFRRAVEKIPGGVNSPVRAFRSVGGQPVFIARGQGSHLFDVDGNEYIDYVGSWGPLILGHRHPEILAALERALEIGTSFGAPTEQEIDLADAIIDAVPSVEMVRLVNSGTEATMSAIRVARGFTGRDLVVKFEGCYHGH 147          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_CARHZ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.349e-46
Identity = 88/146 (60.27%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            +  S EAF+ AK+++PGGVNSPVRAFKSVG  P+  +  +GS ++DIDGN YIDYVGSWGP I+GH   +V  AL   +KKGTSFGAP LLE  +AE++++A P+++MVR VNSGTEA M  +RLAR FTGR +I+  EG YHGHA
Sbjct:    5 IDRSIEAFSEAKKVIPGGVNSPVRAFKSVGLNPVFIERGEGSKIYDIDGNCYIDYVGSWGPLILGHRHPKVEEALANCLKKGTSFGAPTLLETEMAEIIVNAFPAMDMVRMVNSGTEATMSAIRLARGFTGRNKIVKFEGCYHGHA 150          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAW (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain MW2) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAU (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_PROMM1.017e-5772.03Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNJA1.734e-5767.33Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROM42.265e-5770.95Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_CHLRE1.468e-5671.03Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_GLOVI3.502e-5060.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Gloeob... [more]
GSA2_BACHD1.331e-4966.44Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA_SOLUE1.377e-4660.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Soliba... [more]
GSA_CARHZ2.349e-4660.27Glutamate-1-semialdehyde 2,1-aminomutase OS=Carbox... [more]
GSA1_STAAW3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAU3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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