FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROMM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemL PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.135e-41
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+  F+ A+ LMPGGV+SPVRAF+SVGGQPI FD VKG++ WD+DGN +IDY+GSWGPAI G    +V+ AL + ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    6 SQAIFSAAQRLMPGGVSSPVRAFRSVGGQPIVFDRVKGAYAWDVDGNRFIDYIGSWGPAICGHAHPEVIVALQDALEKGTSFGAPCELENQLAEMVIDAVPSVEMVRFVNSGTEAC 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROM4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemL PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.759e-41
Identity = 80/116 (68.97%), Postives = 92/116 (79.31%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+  FN A++LMPGGV+SPVRAFKSV G PI FD VKG + WD+DGN +IDYVGSWGPAI G    +V+AAL E ++KGTSFGAPC LEN LA MVI AVPS EM  FVNSGT+AC
Sbjct:   10 SQAVFNAAQDLMPGGVSSPVRAFKSVNGDPIVFDRVKGPYAWDLDGNRFIDYVGSWGPAICGHSHPEVIAALQEALEKGTSFGAPCELENKLAGMVIEAVPSVEMVRFVNSGTEAC 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNJA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hemL PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.951e-40
Identity = 76/123 (61.79%), Postives = 95/123 (77.24%), Query Frame = 2
Query:  134 KNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            ++     S + F  A++LMPGGV+SPVRAFKSVGG P+ FD V G++ WD+DGN+YIDY+GSWGPAI+G    +V+ AL   ++KGTSFGAPC+LEN LAE VI AVPS EM  FVNSGT+AC
Sbjct:    8 RSFNTSRSRQIFARAQQLMPGGVSSPVRAFKSVGGDPVVFDRVAGAYAWDVDGNQYIDYIGSWGPAIVGHAHPEVIEALRRALEKGTSFGAPCVLENELAERVIEAVPSVEMVRFVNSGTEAC 130          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNJB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. GN=hemL PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S++ F  A+ LMPGGV+SPVRAFKSVGG P+ FD V G++ WD+DGN+YIDY+GSWGPAI+G    +V+ AL   ++KGTSFGAPC+LEN LAE VI AVPS EM  FVNSGT+AC
Sbjct:   15 SKQVFARAQSLMPGGVSSPVRAFKSVGGDPVVFDRVSGAYAWDVDGNQYIDYIGSWGPAIVGHAHPEVIEALRRALEKGTSFGAPCVLENELAERVIEAVPSVEMVRFVNSGTEAC 130          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_BACHD (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus halodurans GN=hemL2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.380e-35
Identity = 75/119 (63.03%), Postives = 88/119 (73.95%), Query Frame = 2
Query:  143 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            T + S  AFN AK LMPGGVNSPVRAFKSV   P+  +  KG++++DIDGNEYIDYV SWGP I+G  DDQV+  L ET +KGTSFGAP  LE  LAE+VI  VPS E+   VNSGT+A
Sbjct:    3 TFEKSSAAFNRAKPLMPGGVNSPVRAFKSVNMDPVFMERGKGANIYDIDGNEYIDYVLSWGPLILGHADDQVVEKLKETTEKGTSFGAPSELETKLAELVIERVPSIEVVRMVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_GLOVI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Gloeobacter violaceus GN=hemL PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.310e-33
Identity = 63/115 (54.78%), Postives = 87/115 (75.65%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S   F  A++LMPGGVNSPVRAFKSVG +P+  +  +G+++WD+DGN YI+Y+ +WGP+I+G    +V++AL E + KGTS+GAP  LEN +A  VI A+P+ EM  FVNSGT+A
Sbjct:   11 SHRLFAEAQQLMPGGVNSPVRAFKSVGSEPVFIERAEGAYLWDVDGNRYIEYINTWGPSIVGHSHPEVISALREALPKGTSYGAPTRLENQMARTVIDAIPAVEMVRFVNSGTEA 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SOLUE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Solibacter usitatus (strain Ellin6076) GN=hemL PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.722e-33
Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +T   SEE F  A E +PGGVNSPVRAF+SVGGQP+     +GSH++D+DGNEYIDYVGSWGP I+G    ++LAAL   ++ GTSFGAP   E  LA+ +I AVPS EM   VNSGT+A
Sbjct:    1 MTHTKSEELFRRAVEKIPGGVNSPVRAFRSVGGQPVFIARGQGSHLFDVDGNEYIDYVGSWGPLILGHRHPEILAALERALEIGTSFGAPTEQEIDLADAIIDAVPSVEMVRLVNSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA2_OCEIH (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Oceanobacillus iheyensis GN=hemL2 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.956e-32
Identity = 73/120 (60.83%), Postives = 86/120 (71.67%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +TL  S +A+  A +LMPGGVNSPVRAFKSVG  PI     KGS + DID NEYIDYV SWGP I+G  D++V+  L +   KGTSFGAP LLEN LA++VI  VPS EM   VNSGT+A
Sbjct:    1 MTLNQSIDAYKEAVDLMPGGVNSPVRAFKSVGMNPIFMKEGKGSKIVDIDNNEYIDYVLSWGPLILGHSDERVVKKLQDITAKGTSFGAPTLLENDLAKLVIDRVPSIEMVRMVNSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAW (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain MW2) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_STAAU (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus GN=hemL1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.357e-32
Identity = 73/115 (63.48%), Postives = 84/115 (73.04%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+G  D QV++ L E + KGTSFGA  LLEN LA++VI  VPS E    V+SGT+A
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEA 120          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_PROMM5.135e-4167.24Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM48.759e-4168.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNJA1.951e-4061.79Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNJB2.548e-4065.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA2_BACHD9.380e-3563.03Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA_GLOVI2.310e-3354.78Glutamate-1-semialdehyde 2,1-aminomutase OS=Gloeob... [more]
GSA_SOLUE6.722e-3359.17Glutamate-1-semialdehyde 2,1-aminomutase OS=Soliba... [more]
GSA2_OCEIH1.956e-3260.83Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Ocea... [more]
GSA1_STAAW4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAU4.357e-3263.48Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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