FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_VIBVY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio vulnificus (strain YJ016) GN=hemL PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E +  A++ +PGGVNSPVRAF  VGG PI  +   G+ ++D DG  YIDYVGSWGP I+G     +  A+ E  ++G SFGAP  +E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSAELYQKAQQTIPGGVNSPVRAFNGVGGSPIFVERADGAFIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIEAAQRGLSFGAPTEMEIKMAELVSELVPSMEQLRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_VIBVU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio vulnificus GN=hemL PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E +  A++ +PGGVNSPVRAF  VGG PI  +   G+ ++D DG  YIDYVGSWGP I+G     +  A+ E  ++G SFGAP  +E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSAELYQKAQQTIPGGVNSPVRAFNGVGGSPIFVERADGAFIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIEAAQRGLSFGAPTEMEIKMAELVSELVPSMEQLRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_RUTMC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=hemL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  SE  F  AK ++PGGVNSPVRAF  VGG PI F   +G++++D D  +YIDYV SWG  I+G  +  V+ A+  T++ G  FGAP  +E  LAE V   +PS E+   V+SGT+A
Sbjct:    1 MNQSETLFAQAKTVIPGGVNSPVRAFNGVGGSPIFFTRGEGAYLFDEDDKKYIDYVASWGSMILGHTNQAVIIAVKTTLENGLGFGAPTQIETKLAEKVCELMPSIELVRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_RALPJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralstonia pickettii (strain 12J) GN=hemL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 58/119 (48.74%), Postives = 72/119 (60.50%), Query Frame = 2
Query:  143 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            T   S   F  A++ +PGGVNSPVRAF+SVGG P       G ++WD DG  YIDYVGSWGP I+G    +V+ A+ E      SFGAP   E V+AE +   VPS E    V+SGT+A
Sbjct:    3 TPSRSAALFERAQKTIPGGVNSPVRAFRSVGGIPRFIAKAAGPYLWDADGTRYIDYVGSWGPMIVGHAHPEVVRAVQEVAADSFSFGAPTEAEVVMAEEICKLVPSIEQVRLVSSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_NAUPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=hemL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 2
Query:  167 FNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            F  AK+ + GGVNSPVRAFKSVGG+P   +  +G++++DI+GN+Y+DY+ SWGP I G  D  +  A+   + KG SFGAP  +E  LA+ V+   P  ++  FVNSGT+A
Sbjct:    4 FEEAKKYIVGGVNSPVRAFKSVGGEPPFIEKGEGAYIYDINGNKYLDYIQSWGPLIFGHCDKDIEKAICNAVSKGVSFGAPTTVEVELAKEVLDLFPHLDLIRFVNSGTEA 114          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMC1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter concisus (strain 13826) GN=hemL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 50/115 (43.48%), Postives = 79/115 (68.70%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++EAF+ AK+ +PGGVNSPVRAF SVGG+P+  D  +G++++D++G +Y+D++ SWGP I G  D  +  A+   +K+G S+GAP   E  LA+++       +   FV+SGT+A
Sbjct:    3 NKEAFSEAKKYIPGGVNSPVRAFGSVGGEPVMIDHARGAYLYDVEGKKYLDFIQSWGPLIFGHCDKDIEEAIISAVKQGVSYGAPSPKETALAKLICDEFKQIDKIRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SODGM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sodalis glossinidius (strain morsitans) GN=hemL PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.501e-24
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + +S   +  A++L+PGGVNSPVRAF  VGG P+   S  G+ + D DGN YIDYVGSWGP ++G     +  A+ + +++G SFGAP  +E  +A ++   VPS E    VNSGT+A
Sbjct:    1 MSHSASLYAEAQQLIPGGVNSPVRAFNGVGGTPLFIASADGARLTDADGNSYIDYVGSWGPMVLGHNHPAIRQAVLDAVQRGLSFGAPTEIEVKMARLLTELVPSIESVRMVNSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PSEA6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hemL PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.501e-24
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++ SE+ F  A++ +PGGVNSPVRAF++VGG P   +   G +++D DG +YIDYV SWGP ++G  +  +  A+ +  + G SFGAP   E  +A++V   VPS EM   VNSGT+A
Sbjct:    1 MQKSEQLFARAQKHIPGGVNSPVRAFRAVGGTPPFIEKADGPYLYDADGKQYIDYVQSWGPMVLGHNNPIIRQAVIDAAQNGLSFGAPTEAEVTIADLVSELVPSMEMLRMVNSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CYTH3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=hemL PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.501e-24
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            K S   F+ AKE++PGGVNSPVRAF++VGG P+      G+++ D D N+YI+ + SWGP I+G  ++ +  A+ + +    SFGAP   E  +AE+++S VPS EM   VNSGT+A
Sbjct:    4 KTSAGLFSRAKEVIPGGVNSPVRAFRAVGGNPLFIKRAHGAYLVDEDDNQYIELINSWGPMILGHGNELIEKAVRDALSNSLSFGAPSRKEVEMAELIVSMVPSVEMVRMVNSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CHRVO (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chromobacterium violaceum GN=hemL PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.501e-24
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  161 EAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            E F   K+++PGGVNSPVRAF  VGG P      +G++ WD DG +Y+DYVGSWGPAI+G    +V+ A+ +    G SFGAP   E V+AE +   +PS E    V+SGT+A
Sbjct:    6 ELFERGKQVIPGGVNSPVRAFGQVGGTPRFVARAEGAYFWDADGKQYLDYVGSWGPAIVGHAHPEVVKAVQDAAVGGLSFGAPTEGEVVIAEEICKLLPSVEQVRLVSSGTEA 118          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_VIBVY1.149e-2447.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_VIBVU1.149e-2447.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_RUTMC1.149e-2447.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Ruthia... [more]
GSA_RALPJ1.149e-2448.74Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralsto... [more]
GSA_NAUPA1.149e-2448.65Glutamate-1-semialdehyde 2,1-aminomutase OS=Nautil... [more]
GSA_CAMC11.149e-2443.48Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_SODGM1.501e-2445.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Sodali... [more]
GSA_PSEA61.501e-2445.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_CYTH31.501e-2446.15Glutamate-1-semialdehyde 2,1-aminomutase OS=Cytoph... [more]
GSA_CHRVO1.501e-2448.67Glutamate-1-semialdehyde 2,1-aminomutase OS=Chromo... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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