FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_METPP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Methylibium petroleiphilum (strain PM1) GN=hemL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  167 FNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            F  A+  +PGGVNSPVRAF++VGG P       G+++WD DG  YIDY+GSWGP I+G     VL A+ +   +G SFGAP   E  LAE ++  VPS E    V+SGT+A
Sbjct:   10 FERARRSIPGGVNSPVRAFRAVGGTPRFIARADGAYLWDADGKRYIDYIGSWGPMILGHGHPAVLEAVQKAATEGFSFGAPTEREVELAEEILKLVPSAEQVRLVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DESPS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfotalea psychrophila GN=hemL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S++ F  AK+++PGGVNSPVRA  SVG  P+  +  +GS+++D DG +Y+D+V SWGP I+G     ++ A+ +    GTS+GAP   E  LA MV+ AVPS E   FV+SGT+A
Sbjct:    6 SKKLFAEAKKVIPGGVNSPVRACLSVGCDPLFIERAEGSYIYDADGQKYLDFVNSWGPMIMGHAHPDIIKAIQDAAVYGTSYGAPTSSEVDLASMVVEAVPSIEKVRFVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMJR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni (strain RM1221) GN=hemL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + G  D  +  A  + + KG+SFGAP LLE  LA++V+S  P  E   FV+SGT+A
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMJJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=hemL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + G  D  +  A  + + KG+SFGAP LLE  LA++V+S  P  E   FV+SGT+A
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMJD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=hemL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + G  D  +  A  + + KG+SFGAP LLE  LA++V+S  P  E   FV+SGT+A
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMJ8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=hemL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + G  D  +  A  + + KG+SFGAP LLE  LA++V+S  P  E   FV+SGT+A
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ACIAC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 2
Query:  167 FNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            F  AK L+PGGVNSPVRAF++VGG P      +G++ WD +G  +IDY+GSWGP I+G     VL A+ +    G SFGAP   E  LAE ++  VPS EM   V+SGT+A
Sbjct:   12 FERAKALIPGGVNSPVRAFRAVGGTPRFVQRAQGAYFWDANGQRFIDYIGSWGPMILGHGHPAVLEAVQKAALDGFSFGAPTEREVELAEEILRHVPSMEMIRLVSSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_VIBPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio parahaemolyticus GN=hemL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.344e-24
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E +  A++ +PGGVNSPVRAF  VGG P+  +   G+ ++D DG  YIDYVGSWGP I+G     +  A+ +  ++G SFGAP  +E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSSELYQKAQQTIPGGVNSPVRAFNGVGGSPLFIERADGALIFDADGRAYIDYVGSWGPMILGHNHAVIREAVIDAAQRGLSFGAPTEMEIAMAELVSELVPSMEQIRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_VIBHB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemL PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.344e-24
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E +  A++ +PGGVNSPVRAF  VGG P+  +   G+ ++D DG  YIDYVGSWGP I+G     +  A+ +  ++G SFGAP  +E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSSELYQKAQQTIPGGVNSPVRAFNGVGGSPLFIERADGALIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIDAAQRGLSFGAPTEMEIAMAELVSELVPSMEQIRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_NEIMA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisseria meningitidis serogroup A GN=hemL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.344e-24
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  +E  F+ AK ++PGGVNSPVRAF SVGG P      +G+++WD +G  Y DYVGSWGPAI+G    +V+ A+ E    G SFGAP   E  +AE +   +PS E    V+SGT+A
Sbjct:    1 MNRNEILFDRAKAVIPGGVNSPVRAFGSVGGVPRFIKKAEGAYVWDENGTRYTDYVGSWGPAIVGHAHPEVIEAVREAALGGLSFGAPTEGEIAIAEEIAKIMPSVERLRLVSSGTEA 118          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_METPP2.560e-2449.55Glutamate-1-semialdehyde 2,1-aminomutase OS=Methyl... [more]
GSA_DESPS2.560e-2447.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_CAMJR2.560e-2448.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_CAMJJ2.560e-2448.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_CAMJD2.560e-2448.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_CAMJ82.560e-2448.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_ACIAC2.560e-2450.45Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidov... [more]
GSA_VIBPA3.344e-2445.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_VIBHB3.344e-2445.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_NEIMA3.344e-2447.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisse... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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