FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMJE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni GN=hemL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +++AF    + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + G  D  +  A  + + KG+SFGAP LLE  LA++V+S  P  E   FV+SGT+A
Sbjct:    3 NKKAFKETCKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ACIC1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=hemL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S   F  A+  +PGGVNSPVRAF++VGG P    S  G ++ D+DGN Y+D V SWGP I+G     V+AA+ +  ++GTSFGAP   E  +AE +   VP+ EM   VNSGT+A
Sbjct:   10 SAACFERARARIPGGVNSPVRAFRAVGGTPRFIQSGAGPYLVDVDGNRYVDLVCSWGPLILGHAHPAVVAAVKQAAERGTSFGAPTEAEIEMAEEIARRVPAVEMIRLVNSGTEA 124          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ACIBL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidobacteria bacterium (strain Ellin345) GN=hemL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            L  S E    A+ L+PGGVNSPVRAF++VGG+P      +G+ ++D DGN YIDYV SWGP I+G     V+ A+ +  +KGTSFGA    E  LAE V+ A+P+ E   FV+SGT+A
Sbjct:    5 LDRSRELQKRAEALIPGGVNSPVRAFRAVGGEPPILVRGEGARVFDADGNGYIDYVLSWGPLILGHAFTPVINAIEKAAEKGTSFGASTPTEADLAEAVVHAMPAIEKIRFVSSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_BACHD (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Bacillus halodurans GN=hemL1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SE  F  A+ L+ GGVNSP R+FK+VGG  P+  +  KG++ WD+DGN+YIDY+ ++GP I G     +  A+    + G  +G P  LEN  A M+  A+PS E   FVNSGT+A
Sbjct:    6 SESLFQKAQSLIVGGVNSPSRSFKAVGGGAPVFMEKAKGAYFWDVDGNQYIDYLAAYGPIITGHAHPHITNAIQRAAENGVLYGTPTKLENQFASMLQQAIPSLEKVRFVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_LEPIC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=hemL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.729e-24
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            K SEE F  AK++ PGGV+SPVR+F+SVGG P+ F S KG+ + DI G EYIDY  S+GP I+G  D ++   + ET +   SFGA       LAE++ S VP  E   FVNSGT+A
Sbjct:   18 KTSEELFERAKKVSPGGVHSPVRSFRSVGGTPVFFASAKGATLTDISGKEYIDYCLSFGPLILGHRDPEIEEVVRETTEIAWSFGAAEPYSLELAELISSRVPWAEKVRFVNSGTEA 134          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SULNB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfurovum sp. (strain NBC37-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 54/112 (48.21%), Postives = 76/112 (67.86%), Query Frame = 2
Query:  164 AFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            AF  A +++PGGV+SPVRAF  V G P   +  +G++++DIDGN YIDYV SWGP I G  D  + A++ +++KKG SFGAP  +E  LAE ++    S +   FV+SGT+A
Sbjct:    9 AFEEAYKVIPGGVDSPVRAFSGVEGTPPFIERGEGAYLFDIDGNRYIDYVQSWGPLIFGHTDADIEASVIDSVKKGLSFGAPTTVETELAEEIVLMFESIDKVRFVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DESAA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=hemL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++ S+E F  A + +PGGVNSPVRA  SVG  P      +GS ++D DG +YIDY+GSWGP I+G     V+ A+   +  G +FGAP  LE  LAE V++ +PS EM   VNSGT+A
Sbjct:    1 MEKSKELFARACKTIPGGVNSPVRACGSVGTDPCFIARGQGSAIFDADGKQYIDYIGSWGPLILGHRHPAVIKAIEAALANGCTFGAPTELEIDLAEAVVNIMPSVEMVRMVNSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_COREF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium efficiens GN=hemL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 2
Query:  101 VKMSVSVEEQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            V MS S      N++   S E F  AK   PGGVNSPVRAF SVGGQ    D   GS + D+DGNEY+D V SWGP ++G     VL A+ +T+  G SFGAP + E  LA+ +I+     E+R  VNSGT+A
Sbjct:    2 VDMSASPSGTSANVS--RSIEWFEKAKMFTPGGVNSPVRAFGSVGGQARFIDRAHGSTLIDVDGNEYVDLVCSWGPMLMGHAHPAVLEAVQKTIVDGLSFGAPTIGEVELAQDIINRTSVEEVR-LVNSGTEA 131          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ALISL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Aliivibrio salmonicida (strain LFI1238) GN=hemL PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 57/118 (48.31%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E F  A+E +PGGVNSPVRAF  VGG PI  +   G  ++D DG  YIDYVGSWGP I+G     +  A+    ++G SFGAP   E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSAELFAKAQEKIPGGVNSPVRAFAGVGGSPIFIERADGPLIFDADGKAYIDYVGSWGPMILGHNHAAIREAVISAAQRGLSFGAPTETEINMAELVSELVPSMEQVRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_VIBFM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio fischeri (strain MJ11) GN=hemL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 56/118 (47.46%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E F  A++ +PGGVNSPVRAF  VGG PI  +   G  ++D DG  YIDYVGSWGP I+G     +  A+    ++G SFGAP   E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSAELFAKAQDKIPGGVNSPVRAFAGVGGSPIFVERADGPLIFDADGKAYIDYVGSWGPMILGHNHAAIREAVISAAQRGLSFGAPTETEITMAELVSELVPSMEQVRMVSSGTEA 118          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_CAMJE7.449e-2447.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_ACIC17.449e-2448.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidot... [more]
GSA_ACIBL7.449e-2450.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidob... [more]
GSA1_BACHD7.449e-2445.69Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Baci... [more]
GSA_LEPIC9.729e-2450.43Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptos... [more]
GSA_SULNB1.660e-2348.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfur... [more]
GSA_DESAA1.660e-2348.31Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_COREF1.660e-2348.12Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA_ALISL1.660e-2348.31Glutamate-1-semialdehyde 2,1-aminomutase OS=Aliivi... [more]
GSA_VIBFM2.167e-2347.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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