FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_VIBF1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=hemL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 56/118 (47.46%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E F  A++ +PGGVNSPVRAF  VGG PI  +   G  ++D DG  YIDYVGSWGP I+G     +  A+    ++G SFGAP   E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSAELFAKAQDKIPGGVNSPVRAFAGVGGSPIFVERADGPLIFDADGKAYIDYVGSWGPMILGHNHAAIREAVISAAQRGLSFGAPTETEITMAELVSELVPSMEQVRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_LAWIP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=hemL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.167e-23
Identity = 51/117 (43.59%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++S+E ++ A +L+PGGVNSPVRA ++VG +P+  +S KG+++  +DG E +D+V SWG  I+G  +  V  A+ +    GT+FGAPC  E +LA+ +I A P  +M   V+SGT+A
Sbjct:    4 ESSKELYSKAVKLIPGGVNSPVRACRNVGCEPVFIESAKGAYLTTVDGQELLDFVLSWGAIILGHTNSTVTNAIKKAASNGTTFGAPCKAEVLLAKEIIDAFPGMDMIRMVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_RALSO (Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralstonia solanacearum GN=hemL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.831e-23
Identity = 55/115 (47.83%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S   F  A++ +PGGVNSPVRAF+SVGG P       G ++WD DG   IDYVGSWGP I+G    +V+ A+ +      SFGAP   E V+AE +   VPS E    V+SGT+A
Sbjct:    7 SVSLFERAQKTIPGGVNSPVRAFRSVGGTPRFIAKAAGPYLWDADGTRLIDYVGSWGPMIVGHAHPEVVRAVQQVAADSFSFGAPTEAEVVMAETLCELVPSIEQVRLVSSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_MYXXD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxococcus xanthus (strain DK 1622) GN=hemL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.831e-23
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  152 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +S+  F  A+  +PGGVNSPVRAF+ VGG P+ F    G+ + D+DGN Y+D VGSWGP I+G     +L A+ +  ++G+S+GAP   E   AE++ + +P+ EM   V+SGT+A
Sbjct:    5 HSQALFARAQARIPGGVNSPVRAFRGVGGDPVFFREGAGAWLTDVDGNRYVDLVGSWGPLILGHAYPPILDAIIDAARRGSSYGAPHADEVEFAELICATMPAVEMVRLVSSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_KOCRD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=hemL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.831e-23
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+E F+ A+ +MPGGVNSPVRAF SVGG P    + KG ++ D+DG EY+D V SWGPA+IG     V  A+ E +++G  FGA    E  LAE+V+  V   E    V++GT+A
Sbjct:    4 SQELFDRARRVMPGGVNSPVRAFNSVGGTPPFIAAAKGPYLTDVDGREYVDLVCSWGPALIGHAHPVVTEAVHEAVERGLGFGATTRGETELAELVVDRVAPLEEIRMVSTGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMLR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=hemL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.831e-23
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +KN+++AF  A E + GGV+SPVRAF SVG  P+     KG+++ DI+ N YIDYV SWGP + G  D+ V  A  + ++ G+SFGAP L E  LA+ ++   P  +   FV+SGT+A
Sbjct:    1 MKNNKKAFEEACEYIAGGVDSPVRAFASVGSNPLFIKKGKGAYISDIEDNTYIDYVQSWGPLLFGHCDEDVEKACKKALEHGSSFGAPTLAETKLAKFILQDWPHLDKIRFVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PSEHT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=hemL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.697e-23
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S++ F  A+  +PGGVNSPVRAF  VGG P+     +G+  +D DGN YIDYVGSWGP I+G     +  A+ + ++ G S+GAP   E ++AE V   VPS E    V+SGT+A
Sbjct:    4 SQDLFARAQASIPGGVNSPVRAFNGVGGTPLFITKAEGAFTFDADGNRYIDYVGSWGPMIMGHNHPAIKQAVHDAVENGLSYGAPTEAEILMAEKVKELVPSIEKVRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DEIRA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Deinococcus radiodurans GN=hemL PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.697e-23
Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SE  F  A+ + PGGVNSPVRAF+SVGG P    S +G+++ D DG  Y+DY+GSWGP I+G     V  A+ + +  GTSFGAP   E  LAE+++    +  +R FV+SGT+A
Sbjct:   12 SEALFVRARAVTPGGVNSPVRAFRSVGGVPRFIASAQGAYLTDADGARYLDYIGSWGPMILGHNHPAVRDAVAQALASGTSFGAPNEREVELAELIVELTGAERVR-FVSSGTEA 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PSYCK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychrobacter cryohalolentis (strain K5) GN=hemL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.828e-23
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +E+ F  A++ +PGGVNSPVRAF  VGG PI      GS ++D + N YIDYVGSWGP I+G    +V+ A+ +    G SFG P   E  +A+ +   VPS EM    +SGT+A
Sbjct:    5 NEQLFAQARKHIPGGVNSPVRAFAGVGGTPIFMHRANGSKIYDTEDNAYIDYVGSWGPMILGHAHPKVIDAVKKAADDGLSFGTPTPFETTVADKICEIVPSVEMIRMTSSGTEA 119          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_FUSNN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Fusobacterium nucleatum subsp. nucleatum GN=hemL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.828e-23
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQ-PIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  KNS + +  A EL+PGGVNSPVRAFKSV  + PI     +G+ +WD D NEYIDY+ SWGP I+G    +V+  + + ++ G+S+G P   E  LAE+++  VPS E      SGT+A
Sbjct:    1 MVFKNSIDLYKKAVELIPGGVNSPVRAFKSVNREAPIFIKKGQGAKIWDEDDNEYIDYICSWGPLILGHNHPKVIEEVKKIIENGSSYGLPTKYEVDLAELIVDIVPSIEKVRLTTSGTEA 121          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_VIBF12.167e-2347.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_LAWIP2.167e-2343.59Glutamate-1-semialdehyde 2,1-aminomutase OS=Lawson... [more]
GSA_RALSO2.831e-2347.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Ralsto... [more]
GSA_MYXXD2.831e-2344.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxoco... [more]
GSA_KOCRD2.831e-2347.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Kocuri... [more]
GSA_CAMLR2.831e-2345.76Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_PSEHT3.697e-2346.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_DEIRA3.697e-2347.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Deinoc... [more]
GSA_PSYCK4.828e-2346.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychr... [more]
GSA_FUSNN4.828e-2345.45Glutamate-1-semialdehyde 2,1-aminomutase OS=Fusoba... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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