FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CORJK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium jeikeium (strain K411) GN=hemL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.828e-23
Identity = 63/132 (47.73%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  107 MSVSVEEQ-KKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            MSV+ + Q   N + + SE+AF+ A+ L+PGGVNSPVRAF SVGG P    S +GS + D+DGN Y+D   SWGP I G    Q++ A+ E    G SFGAP  +E  L E  I    S E    VNSGT+A
Sbjct:    1 MSVNADSQHSNNSSHQASEKAFDRARSLIPGGVNSPVRAFGSVGGTPPFITSAQGSTLHDVDGNSYVDLFCSWGPMIHGHAHPQIVEAVREAAGHGLSFGAPTTMEVDLVE-EIDRRTSVEKARLVNSGTEA 131          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_VIBSL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio splendidus (strain LGP32) GN=hemL PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.306e-23
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  S E +  A++ +PGGVNSPVRAF  VGG PI  +   G  ++D DG  YIDYVGSWGP I+G     +  A+    ++G SFGAP   E  +AE+V   VPS E    V+SGT+A
Sbjct:    1 MTKSAELYEKAQQTIPGGVNSPVRAFNGVGGSPIFVERADGPLIFDADGKAYIDYVGSWGPMILGHNHVVIRDAVIAAAQRGLSFGAPTETEIKMAELVSEMVPSMEQLRMVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_RHOFD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=hemL PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.306e-23
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  152 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            N++  F  AK ++PGGVNSPVRAFK+VGG P      +G++ WD +   Y D++GSWGP I+G     V+ A+   + +G S+GAP   E  LAE ++  VPS +M   V+SGT+A
Sbjct:    7 NNQILFERAKRVIPGGVNSPVRAFKAVGGTPRFVKRAQGAYFWDANNQRYTDFIGSWGPMILGHGHPAVVEAVQAAVLEGFSYGAPTEREVELAEEILRLVPSMDMVRLVSSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DESVV (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=hemL PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.306e-23
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + S E F  A++L+PGGVNSPVRA   V  +P+      GS +  +DG  +ID+V SWGP ++G    +V AA+   + +GTS+GAPC  E VLA  V+ A+P  +M   VNSGT+A
Sbjct:    3 QRSSELFERAQQLIPGGVNSPVRACLGVDSEPLFIARAAGSRLHTVDGETFIDFVESWGPMLLGHTHPEVTAAVHAAVDRGTSYGAPCEDEVVLAAKVVDALPGVDMVRMVNSGTEA 119          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DESVH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=hemL PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.306e-23
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            + S E F  A++L+PGGVNSPVRA   V  +P+      GS +  +DG  +ID+V SWGP ++G    +V AA+   + +GTS+GAPC  E VLA  V+ A+P  +M   VNSGT+A
Sbjct:    3 QRSSELFERAQQLIPGGVNSPVRACLGVDSEPLFIARAAGSRLHTVDGETFIDFVESWGPMLLGHTHPEVTAAVHAAVDRGTSYGAPCEDEVVLAAKVVDALPGVDMVRMVNSGTEA 119          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DEIDV (Glutamate-1-semialdehyde 2,1-aminomutase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=hemL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 56/119 (47.06%), Postives = 72/119 (60.50%), Query Frame = 2
Query:  143 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            T   SE  F  A+ + PGGVNSPVRAFKSVGG P       G+++ D+D   Y+DY+GSWGP I+G     +  A+   +  GTSFGAP   E  LAE+V     +  +R FVNSGT+A
Sbjct:    5 TTTRSEALFERARAVTPGGVNSPVRAFKSVGGVPRFIREAHGAYLTDMDDTRYVDYIGSWGPMILGHDHPTIREAIATALTGGTSFGAPGEREVELAELVTRLTGAGRVR-FVNSGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CAMHC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=hemL PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.236e-23
Identity = 51/116 (43.97%), Postives = 79/116 (68.10%), Query Frame = 2
Query:  152 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++ + F+ A +++PGGV+SPVRAFK+VG +P      KG++++DI+GN+Y+D+V SWGP I G  D  +  A+ +T K G SFGA   LE  LA++++S     +   FV+SGT+A
Sbjct:    2 SNHKEFSEALKVIPGGVDSPVRAFKNVGSEPFMVQKGKGAYIYDIEGNKYLDFVQSWGPLIFGHADKDIQDAVIKTAKSGLSFGASSPLETKLAKLILSKFDWLDKIRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_DECAR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Dechloromonas aromatica (strain RCB) GN=hemL PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.076e-22
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +++ F  A+  +PGGVNSPVRAF+SVGG P  F    G+ + D DG  Y DYVGSWGP I+G     V+AA+   +  G SFGAP   E  +A+++   VPS +M   V+SGT+A
Sbjct:    5 NQQLFERAQRHIPGGVNSPVRAFRSVGGTPCFFQKGVGAKVQDADGKWYTDYVGSWGPMILGHAHPDVIAAVQAAVVDGLSFGAPTEKEVDIADLLCELVPSMDMVRLVSSGTEA 119          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PSYA2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=hemL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +E+ F  A + +PGGVNSPVRAF  VGG PI      GS ++D + N YIDYVGSWGP I+G    +V+ A+ +    G SFG P   E  +A+ +   VPS EM    +SGT+A
Sbjct:    5 NEQLFAQACKHIPGGVNSPVRAFAGVGGTPIFMHRANGSKIYDTEDNAYIDYVGSWGPMILGHAHPKVIDAVKKAADDGLSFGTPTPFETTVADKICEIVPSVEMIRMTSSGTEA 119          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_MYCGI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycobacterium gilvum (strain PYR-GCK) GN=hemL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  143 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            T + S + F  A  ++PGGVNSPVRAF SVGG P    S KG  + D+DGN+Y+D V SWGP I+G     V+ A+      G SFGAP   E+ LA  +I  V   E    VNSGT+A
Sbjct:    3 TTEESAKLFADASSVIPGGVNSPVRAFNSVGGTPRFITSAKGCRLTDVDGNQYVDLVCSWGPMILGHAHPAVVEAVQRVAAHGLSFGAPTPSESELAREIIDRVAPVERVRLVNSGTEA 121          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_CORJK4.828e-2347.73Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA_VIBSL6.306e-2346.61Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_RHOFD6.306e-2344.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodof... [more]
GSA_DESVV6.306e-2345.30Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_DESVH6.306e-2345.30Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_DEIDV8.236e-2347.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Deinoc... [more]
GSA_CAMHC8.236e-2343.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_DECAR1.076e-2246.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Dechlo... [more]
GSA_PSYA21.835e-2246.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychr... [more]
GSA_MYCGI1.835e-2247.06Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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