FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_LARHH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Laribacter hongkongensis (strain HLHK9) GN=hemL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +  +++ F  AK ++PGGVNSPVRAF SVGG P      +G++MWD D    IDY+GSWGP I+G     V+ A+ +    G SFG P   E  +AE +   +PS E    V+SGT+A
Sbjct:    1 MDRNQQLFERAKHVIPGGVNSPVRAFGSVGGSPRFIKRAQGAYMWDADDRRLIDYIGSWGPMILGHAHPAVVEAVQQAAVHGLSFGTPTEAEIGIAEEICKLMPSIERVRLVSSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_OPITP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.396e-22
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+  F  AK+LMPGGVNSPVRAF+SVGG P    + +G+ +   D  E ID+V +WGPAI G    ++ AA+ E ++ GTSFG P   E  +AE+++   PS +     NSGT+A
Sbjct:    4 SDSLFERAKQLMPGGVNSPVRAFRSVGGAPFFVKAARGATLVTADDQELIDFVCTWGPAIHGHNHPRIKAAIAEALEHGTSFGTPNPYEVEMAELIVRFFPSIQKVRMCNSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_METVS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=hemL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  137 NITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            NI L  S E FN +K+ + GGVNSPVR+FK     P    S K   ++D DGNE+IDY  ++GP ++G  ++++L A+ E M  GT++G P   E +LA+ VI+ +P  EM  FVNSGT+A
Sbjct:    4 NIKLDKSGELFNESKKYLVGGVNSPVRSFKPF---PFFVKSAKSCFLYDEDGNEFIDYCLAYGPMVLGHANEKILNAVKEQMDFGTAYGVPSEKEIILAKEVINRIPCAEMVRFVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CLOAB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostridium acetobutylicum GN=hemL PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++E F  +KE MPGGVNSPVRA+  +   P    S K SH++D +G EYID++ +WGP I+G  + +VL  + E + +G  FGAP  LE  LA+ + + V + EM   VNSGT+A
Sbjct:    3 NKEIFEESKEYMPGGVNSPVRAYMDLNIDPPIIKSGKDSHLFDEEGKEYIDFIEAWGPMILGHKNQKVLNEVKEVLDEGVGFGAPTSLELKLAKYICTTVDNVEMIRMVNSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_THEAB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosipho africanus (strain TCF52B) GN=hemL PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.088e-22
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 2
Query:  167 FNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            F +AK+ MPGGVNSPVRAFKSV  +PI   S K S + DI+  EYIDY+ SWG  I+G   ++V+  + +  + GTS+G    LE  +A +++  +PS EM   VNSGT+A
Sbjct:    2 FEIAKKYMPGGVNSPVRAFKSVEMEPIFVKSAKKSKLIDINNKEYIDYIQSWGALILGHAHEEVVEEIKKQAELGTSYGLCHELEVEMARLIVKHIPSVEMVRMVNSGTEA 112          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ARTS2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Arthrobacter sp. (strain FB24) GN=hemL PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.088e-22
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            +E  F+ A++LMPGGVNSPVRAF SVGG P    S KG+++ D DG EY+D V SWGPA++G     VL A+   + +G SFGA    E  LA +V   VP+ E    V++GT+A
Sbjct:    8 NEALFDRARQLMPGGVNSPVRAFGSVGGTPRFMVSAKGAYLTDADGAEYVDLVCSWGPALLGHAHPAVLEAVHAAVDRGLSFGASTPDEANLAAIVKERVPAAERVRMVSTGTEA 122          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_NOCSJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=hemL PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S   F  A+ + PGGVNSPVRAF +VGG P    S +G+ + D DGNEY+D + SWGP ++G    +V AA+   + +GTS+GAP   E  LAE + +  P   +R FV+SGT+A
Sbjct:   12 SAALFERARAVTPGGVNSPVRAFNAVGGTPRFIRSARGAWLTDADGNEYVDLICSWGPMLLGHAHPEVQAAVSAAVARGTSYGAPTEPEVELAEEIAARAPVERVR-FVSSGTEA 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_STRGG (Glutamate-1-semialdehyde 2,1-aminomutase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=hemL PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+  F+ A  + PGGVNSPVRAF++VGG P    S  G ++ D DG EY+D V SWGP I+G    +V+AA+ E + +GTSFG P   E  LAE +++ +   E    V+SGT+A
Sbjct:   10 SQSLFDRASVVTPGGVNSPVRAFRAVGGTPRFMVSGTGPYLTDADGREYVDLVCSWGPMILGHSHPEVIAAVQEAVSRGTSFGTPGEGEVALAEEIVARIEPVEQVRLVSSGTEA 124          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA1_BACSK (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Bacillus clausii (strain KSM-K16) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            K SE  +  A+ ++ GGVNSP RA+K VGG  P+  +  +G++ +D+DGN YIDY+ ++GP I G     +  A+ +   KG  FG P  LEN  A+ + +A+PS E   FVNSGT+A
Sbjct:    4 KTSESLYQEAQHVIVGGVNSPSRAYKGVGGGTPVFMERGEGAYFYDVDGNRYIDYLAAYGPIITGHAHPVITKAIQDQAAKGVLFGTPTRLENEFAQELTNAIPSLEKVRFVNSGTEA 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_STRCO (Glutamate-1-semialdehyde 2,1-aminomutase OS=Streptomyces coelicolor GN=hemL PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S+  F+ A  + PGGVNSPVRAF++VGG P    S  G ++ D DG EY+D V SWGP I+G    +V+AA+ E + +GTSFG P   E  LAE ++  V   E    V+SGT+A
Sbjct:   13 SQALFDRAAAVTPGGVNSPVRAFRAVGGTPRFMVSGTGPYLTDADGREYVDLVCSWGPMILGHAHPEVIAAVQEAVARGTSFGTPAEGEVALAEAMVERVAPLEEVRLVSSGTEA 127          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_LARHH1.835e-2244.07Glutamate-1-semialdehyde 2,1-aminomutase OS=Lariba... [more]
GSA_OPITP2.396e-2246.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Opitut... [more]
GSA_METVS3.130e-2245.45Glutamate-1-semialdehyde 2,1-aminomutase OS=Methan... [more]
GSA_CLOAB3.130e-2245.22Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostr... [more]
GSA_THEAB4.088e-2247.75Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_ARTS24.088e-2248.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Arthro... [more]
GSA_NOCSJ5.338e-2246.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocard... [more]
GSA_STRGG6.972e-2246.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Strept... [more]
GSA1_BACSK6.972e-2243.22Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Baci... [more]
GSA_STRCO9.106e-2246.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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