FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_MYCS2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycobacterium smegmatis GN=hemL PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 57/125 (45.60%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  125 EQKKNITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            E+    + + S + F  A  ++PGGVNSPVRAF SVGG P    S  G  + D DGN YID V SWGP ++G     V+ A+ +  + G SFGAP   E  LA  +I  V   EM  FVNSGT+A
Sbjct:   12 EEHSPASTQRSAQLFADACAVIPGGVNSPVRAFNSVGGTPRFITSAGGYWLTDADGNRYIDLVCSWGPMLLGHAHPAVVEAVRKVAEHGLSFGAPTPSETELAAEIIDRVAPVEMMRFVNSGTEA 136          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CORGL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium glutamicum GN=hemL PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S E F  A++L PGGVNSPVRAF SVGGQ    +   GS + D+DGNEY+D V SWGP ++G     V+ A+ + +  G SFGAP + E  LA+ ++      E+R  VNSGT+A
Sbjct:   12 SAEWFEKAQKLTPGGVNSPVRAFGSVGGQARFIEKAHGSTLIDVDGNEYVDLVCSWGPMLMGHAHPAVVEAVQKAVVDGLSFGAPTIGEVELAQDIVKRTSVEEVR-LVNSGTEA 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CORGB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium glutamicum (strain R) GN=hemL PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.106e-22
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S E F  A++L PGGVNSPVRAF SVGGQ    +   GS + D+DGNEY+D V SWGP ++G     V+ A+ + +  G SFGAP + E  LA+ ++      E+R  VNSGT+A
Sbjct:   12 SAEWFEKAQKLTPGGVNSPVRAFGSVGGQARFIEKAHGSTLIDVDGNEYVDLVCSWGPMLMGHAHPAVVEAVQKAVVDGLSFGAPTIGEVELAQDIVKRTSVEEVR-LVNSGTEA 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_HYDS0 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=hemL PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.189e-21
Identity = 53/115 (46.09%), Postives = 79/115 (68.70%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++EAF +AK+ MPGGV+SPVRAFKSVG +PI  +   G+ + DI+G +YIDY+ S+GP I+G   + V++ + E + KG SFG   + E  L+E++I A    +   FV+SGT+A
Sbjct:    3 NKEAFELAKKYMPGGVSSPVRAFKSVGAEPIVVNRGFGAFVEDIEGKKYIDYMLSFGPLILGHRSEIVVSKIMEALDKGNSFGITNMYEIELSELIIKASKVIDKVRFVSSGTEA 117          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_THERP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=hemL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 48/118 (40.68%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++NS   ++ A++  PGGVNSPVRAF++VG +P+     +G+++ D DG  ++DY+ SWG  + G     V+  L E +++GTSFG     E  LA  ++++VP+ E+  FVNSGT+A
Sbjct:    3 MENSGSLWDAARQFFPGGVNSPVRAFRAVGEEPVVAVRGEGAYLIDADGRRFLDYICSWGALLAGHAHPHVVDRLSEAIQRGTSFGLLSPYEVELARAIVASVPAIELVRFVNSGTEA 120          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_FRAAA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Frankia alni (strain ACN14a) GN=hemL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEE F  A+ ++PGGVNSPVRAF++VGG P    S  G ++ D DG  Y+D V SWGP I+G     V+ A+   +  GTSFG P   E  LAE+++  V   E    VNSGT+A
Sbjct:   12 SEELFRRAERVVPGGVNSPVRAFRAVGGTPRFMVSGNGPYLTDADGRTYVDLVCSWGPMILGHAHPAVVEAVTRAVSAGTSFGTPTPGEVELAELIVERVGPVEKVRLVNSGTEA 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CORA7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            S E F  A ++ PGGVNSPVRAF SVGGQ       +GS +WDIDGNEY+D V S+GP I G     ++ A+ +    G SFGAP   E +LAE ++      ++R  VNSGT+A
Sbjct:   18 SAEWFERATKVTPGGVNSPVRAFGSVGGQARVIARGEGSRLWDIDGNEYVDLVSSYGPMIHGNAHPAIVEAVQKAAADGLSFGAPTEGETLLAEHIVKRTAVEQVR-LVNSGTEA 131          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ALHEH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 52/118 (44.07%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  146 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            ++ S E F  A++ + GGVNSPVRAF  VGG+P      +G +++D DGN Y+DYV SWGP + G    +V+ A+      G SFGAP  +E  +AE + + +PS E    VNSGT+A
Sbjct:    1 MQRSHELFERARQHIVGGVNSPVRAFTGVGGEPPFIARAEGPYLYDEDGNRYVDYVCSWGPMVAGHAHPKVVRAVQAAAADGLSFGAPTEVEIRMAEKLKAMLPSLERVRMVNSGTEA 118          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_LEIXX (Glutamate-1-semialdehyde 2,1-aminomutase OS=Leifsonia xyli subsp. xyli GN=hemL PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.029e-21
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  167 FNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            F  A+ ++PGGVNSPVRAF+SVGG P       G ++ D +G EY+D V SWGPAI+G     V++A+ E   +G SFGA    E  LAE VI+ VP  E    V++GT+A
Sbjct:   14 FGRAQRVIPGGVNSPVRAFRSVGGTPRFMVFANGPYIVDAEGREYVDLVASWGPAILGHAHPAVVSAVQEAAARGLSFGASTPAETELAEAVIARVPFVEKLRLVSTGTEA 124          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_FRASC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Frankia sp. (strain CcI3) GN=hemL PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.029e-21
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQA 499
            SEE F  A+ ++PGGVNSPVRAF++VGG P    +  G ++ D DG  YID V SWGP I+G     V+ A+   +  GTSFG P   E  LAE+++  V   E    VNSGT+A
Sbjct:   10 SEELFRRAERVVPGGVNSPVRAFRAVGGTPRFMVAGNGPYLTDADGRTYIDLVCSWGPMILGHAHPAVVEAVSRAVSVGTSFGTPTPGEVELAELIVDRVGPVEKVRLVNSGTEA 124          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_MYCS29.106e-2245.60Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycoba... [more]
GSA_CORGL9.106e-2247.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA_CORGB9.106e-2247.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA_HYDS01.189e-2146.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Hydrog... [more]
GSA_THERP1.553e-2140.68Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_FRAAA1.553e-2146.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Franki... [more]
GSA_CORA71.553e-2147.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA_ALHEH1.553e-2144.07Glutamate-1-semialdehyde 2,1-aminomutase OS=Alkali... [more]
GSA_LEIXX2.029e-2147.75Glutamate-1-semialdehyde 2,1-aminomutase OS=Leifso... [more]
GSA_FRASC2.029e-2146.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Franki... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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