FC920261

Overview
NameFC920261
Unique NameFC920261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: HLYBC_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  +   + + C G+T I++AHRLST++NA  I V++ GK+ E G H  LL + P+  Y+ + QLQ
Sbjct:  619 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQLQ 705          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: HLYB3_ECOLX (Alpha-hemolysin translocation ATP-binding protein hlyB OS=Escherichia coli GN=hlyB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  +   + + C G+T I++AHRLST++NA  I V++ GK+ E G H  LL + P+  Y+ + QLQ
Sbjct:  619 ALVNNPKILIFDEATSALDYESEHIIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-SEPESLYSYLYQLQ 705          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: MSBA_RHOFD (Lipid A export ATP-binding/permease protein msbA OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=msbA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++ A I++LDEATSALD ESER VQ AL      +TT+V+AHRLSTI +A  I V+D G++ E G+H+ LL+      YA + +LQ
Sbjct:  495 ALLKDAPILILDEATSALDTESERQVQAALAVLMKNRTTLVIAHRLSTIEHADCILVLDQGRIVETGTHAELLR--AGSYYANLSRLQ 580          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: MSBA_MANSM (Lipid A export ATP-binding/permease protein msbA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=msbA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A +R + +++LDEATSALD ESER++Q AL+     +T +V+AHRLSTI  A  I VID G++ E GSH  LL  N  G Y ++ ++Q
Sbjct:  497 ALLRDSPVLILDEATSALDTESERAIQAALEELQKDRTVLVIAHRLSTIEKADEILVIDHGEICERGSHEELLALN--GAYKQLHKMQ 582          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: MSBA_FRATO (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=msbA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A +++ DEATSALD ESER VQ+AL+      TTIV+AHRLST+ NA  I V+D G V E G H  LL+    G Y R+ Q
Sbjct:  522 ALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVESGKHQELLEQG--GLYTRLYQ 605          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: MSBA_FRATH (Lipid A export ATP-binding/permease protein msbA OS=Francisella tularensis subsp. holarctica (strain LVS) GN=msbA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A +++ DEATSALD ESER VQ+AL+      TTIV+AHRLST+ NA  I V+D G V E G H  LL+    G Y R+ Q
Sbjct:  522 ALLKNAPVLIFDEATSALDNESERVVQQALESLTKSCTTIVIAHRLSTVENADKIVVMDGGMVVESGKHQELLEQG--GLYTRLYQ 605          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: MSBA_ACIAD (Lipid A export ATP-binding/permease protein msbA OS=Acinetobacter sp. (strain ADP1) GN=msbA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQ 259
            A ++ A I++LDEATSALD ESE  +Q+A D A   +TTIV+AHRLSTI NA  I V+D G++ E G+H  LL     G Y ++ Q
Sbjct:  486 AILKNAPILILDEATSALDNESEHFIQKAFDEAMQNRTTIVIAHRLSTIENADRIVVMDKGQIIEQGTHQELLLK--QGAYFQLHQ 569          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: LKTB_PASTR (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella trehalosi GN=lktB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  + + + + C G+T I++AHRLST++NA  I V++ G++ E G H  LL+N+ +G Y+ + QLQ
Sbjct:  620 ALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVEQGKHHELLQNS-NGLYSYLHQLQ 706          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: LKTB_MANGL (Leukotoxin translocation ATP-binding protein lktB OS=Mannheimia glucosida GN=lktB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  + + + + C G+T I++AHRLST++NA  I V++ G++ E G H  LL+N+ +G Y+ + QLQ
Sbjct:  620 ALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVEQGKHHELLQNS-NGLYSYLHQLQ 706          
BLAST of FC920261 vs. ExPASy Swiss-Prot
Match: LKTB7_PASHA (Leukotoxin translocation ATP-binding protein lktB OS=Pasteurella haemolytica GN=lktB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V   +I++ DEATSALD ESE  + + + + C G+T I++AHRLST++NA  I V++ G++ E G H  LL+N+ +G Y+ + QLQ
Sbjct:  620 ALVNNPKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEIVEQGKHHELLQNS-NGLYSYLHQLQ 706          
The following BLAST results are available for this feature:
BLAST of FC920261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
HLYBC_ECOLX3.874e-1645.45Alpha-hemolysin translocation ATP-binding protein ... [more]
HLYB3_ECOLX3.874e-1645.45Alpha-hemolysin translocation ATP-binding protein ... [more]
MSBA_RHOFD5.059e-1650.00Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_MANSM5.059e-1648.86Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRATO5.059e-1651.16Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_FRATH5.059e-1651.16Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_ACIAD5.059e-1651.16Lipid A export ATP-binding/permease protein msbA O... [more]
LKTB_PASTR5.059e-1645.45Leukotoxin translocation ATP-binding protein lktB ... [more]
LKTB_MANGL5.059e-1645.45Leukotoxin translocation ATP-binding protein lktB ... [more]
LKTB7_PASHA5.059e-1645.45Leukotoxin translocation ATP-binding protein lktB ... [more]

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Properties
Property NameValue
Genbank descriptionC32006A08EF RVDevelop1 Citrus clementina cDNA clone C32006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920261 ID=FC920261; Name=FC920261; organism=Citrus clementina; type=EST; length=478bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAA
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