FC920262

Overview
NameFC920262
Unique NameFC920262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 9.345e-22
Identity = 52/140 (37.14%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V    ++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++   +TD+ GL S+  R
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYQLKLGEIVTT-IPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 50/134 (37.31%), Postives = 86/134 (64.18%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 623
            K E ++ ++GL +AGKT+++  +  G    D +PTVGFN+  +   G+V++ LWD+GGQ + R+ W+ Y   +  +VYV+D+ D   L  + +EL ++L  P+++G+P LVL NK + PGAL    + + +GL+
Sbjct:   10 KAEAQVVMMGLDSAGKTTILYKLK-GNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLE 142          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 51/140 (36.43%), Postives = 84/140 (60.00%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    I++VVD+ D + ++ +R EL  +L++  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ R RS+W  Y R    +++VVD+ D   +  +R  +  +LN+  L     LV  NK D P A+S   +T+++GL SI  R
Sbjct:   13 FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D D ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL11_BOVIN (ADP-ribosylation factor-like protein 11 OS=Bos taurus GN=ARL11 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.719e-21
Identity = 53/140 (37.86%), Postives = 90/140 (64.29%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            + E ++ ++GL +AGKT+L+  +   GY   + +PTVGFN+  + + G+V++ LWD+GGQ + R+ W+ +      +VYV+D+ D   L  + +EL ++L+ PS++ +PLLVL NK + P ALS   + D +GL+   GR
Sbjct:   10 RAEAQVVMMGLDSAGKTTLLYRLK--GYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQSQLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQALSLPEIRDRLGLQGFLGR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 50/140 (35.71%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ R RS+W  Y R    +++V+D+ D   +  +R  +  +LN+  L     LV  NK D P A+S   +T+++GL SI  R
Sbjct:   13 FGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT 632
            ++EM + L+GL NAGKT+++     G   + + PT+GFN++ +     T+ +WD+GGQ   RS W  Y  +   +V+VVD+AD   L     EL  LL +  L+G  LLVL NK D PGALS   + + + L+ IT
Sbjct:   14 EREMRILLLGLDNAGKTTILKRF-NGEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDIT 148          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.638e-21
Identity = 53/151 (35.10%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  186 GKLF*IGSAASFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            GK+F    +  F  +EM + + GL  AGKT+++  +  G  S   IPTVGFN+  VT  NV   +WD+GGQ + R +W  Y      +++VVD  D D +  +R ELH ++N   +    +L+  NK D P A+    + +++GL  I  R
Sbjct:    2 GKMF----SKIFGNKEMRILMRGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 50/141 (35.46%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGREVC 647
            ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ   RS W  Y  +   +++VVD+AD   +   + EL +LL +  L+G  LL+  NK D PGALS  A+ + + L SI     C
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSIRSHHWC 153          
The following BLAST results are available for this feature:
BLAST of FC920262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
ARF1_CATRO9.345e-2237.14ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARL11_MOUSE1.220e-2137.31ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]
ARF_CRYNE1.220e-2136.43ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF1_YEAST2.082e-2136.43ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF1_SOLTU2.082e-2136.43ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARL11_BOVIN2.719e-2137.86ADP-ribosylation factor-like protein 11 OS=Bos tau... [more]
ARF2_YEAST3.551e-2135.71ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARL2_DROME4.638e-2139.71ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARF6_XENLA4.638e-2135.10ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARL2_BOVIN6.057e-2135.46ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionC32006A09EF RVDevelop1 Citrus clementina cDNA clone C32006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920262 ID=FC920262; Name=FC920262; organism=Citrus clementina; type=EST; length=654bp
GATACCATATTCATTCAAGTTACGTATATTTGGTCAGTTTGTGGGAACGT
ACGAATACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGT
GGGGGGTCAATTCAAGGCTTAGACCTCAATTGGTTTCTGATTCTGTGATC
ATCGTCATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGA
ATTGGCTCCGCAGCCTCTTTTTTTAAACAGGAAATGGAGCTGTCCCTGAT
TGGACTTCAGAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTG
GTGGATATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAA
GTGACAAAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACC
TAGATTCCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTG
TTTATGTGGTTGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGT
GAACTTCATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTACT
GGTGCTAGGGAACAAGATTGACAAACCCGGAGCTCTATCTAAACAGGCTT
TAACTGATGAAATGGGACTAAAATCCATCACCGGCAGAGAAGTTTGCTGC
TTTA
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