FC920262

Overview
NameFC920262
Unique NameFC920262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y R    I++VVD+ D   ++ +R  L  +LN+  +    LLV  NK D P A+S   +T+++GL SI  R
Sbjct:   13 FGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 49/140 (35.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LL+  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.057e-21
Identity = 49/140 (35.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R EL  +L +  L    LL+  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.911e-21
Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K+EM + ++GL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++VVD+ D + ++ +R EL  +L +  L    LLV  NK D P A++   +TD++GL S+  R
Sbjct:   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 1.033e-20
Identity = 50/141 (35.46%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  225 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGREVC 647
            ++E+ L ++GL NAGKT+++     G   + + PT+GFN++ +      + +WD+GGQ   RS W  Y  +   +++VVD+AD   +   + EL  LL +  L+G  LL+  NK D PGALS  A+ + + L SI     C
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWC 153          
The following BLAST results are available for this feature:
BLAST of FC920262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
ARF_ASHGO6.057e-2136.43ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARF1_LOCMI6.057e-2135.00ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME6.057e-2135.00ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF1_XENLA7.911e-2135.71ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT7.911e-2135.71ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE7.911e-2135.71ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA7.911e-2135.71ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN7.911e-2135.71ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN7.911e-2135.71ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARL2_HUMAN1.033e-2035.46ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006A09EF RVDevelop1 Citrus clementina cDNA clone C32006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920262 ID=FC920262; Name=FC920262; organism=Citrus clementina; type=EST; length=654bp
GATACCATATTCATTCAAGTTACGTATATTTGGTCAGTTTGTGGGAACGT
ACGAATACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGT
GGGGGGTCAATTCAAGGCTTAGACCTCAATTGGTTTCTGATTCTGTGATC
ATCGTCATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGA
ATTGGCTCCGCAGCCTCTTTTTTTAAACAGGAAATGGAGCTGTCCCTGAT
TGGACTTCAGAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTG
GTGGATATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAA
GTGACAAAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACC
TAGATTCCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTG
TTTATGTGGTTGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGT
GAACTTCATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTACT
GGTGCTAGGGAACAAGATTGACAAACCCGGAGCTCTATCTAAACAGGCTT
TAACTGATGAAATGGGACTAAAATCCATCACCGGCAGAGAAGTTTGCTGC
TTTA
back to top