FC920262

Overview
NameFC920262
Unique NameFC920262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF1_DICDI (ADP-ribosylation factor 1 OS=Dictyostelium discoideum GN=arfA PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.006e-20
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 3
Query:  186 GKLF*IGSAASFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            GKLF    +  F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D + +  +  EL  +LN+  L    LLV  NK D P A+S   +TD++ L S+  R+
Sbjct:    6 GKLF----SRFFGKKDMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRK 152          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 55/154 (35.71%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  177 WDCGKLF*IGSAASFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            W     + + S+   + +  +L  +GL NAGKT+L++++     +    PTV     +++ GN     +DLGG  + R +W+ Y   V+ IV++VDAADP   + S++EL  LL    L  +P L+LGNKID P A+S+  L D +GL   TG+
Sbjct:    2 WIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSN-PTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQTTGK 154          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 3
Query:  207 SAASFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            ++   + +  +L  +GL NAGKT+L++++     +  + PT      +++ GNV    +DLGG  + R +W+ Y   V  IVY+VD ADP+    SR EL  LL    LS +P+LVLGNKIDK  A+S+  L   +GL + TG++
Sbjct:   12 ASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMTTTGKD 155          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            F  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++  R+
Sbjct:   13 FGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK 152          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 52/154 (33.77%), Postives = 89/154 (57.79%), Query Frame = 3
Query:  207 SAASFF---------KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            S ASFF         K++  + +IGL  AGK++L+  +  G      IPT+GFN+  +   N+++ +WD+GGQ + R++W+ Y    +AI++VVD+ D + +   + E+ +LL +  L GI +LVL NK D   A++   + + + L SI  R+
Sbjct:    8 SLASFFSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLT-IPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRK 160          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 48/140 (34.29%), Postives = 80/140 (57.14%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGR 638
            F K++M + ++GL  AGKT+++  +  G      IPT+GFN+  V   N+   +WD+GGQ + R +W  Y +    +++VVD+ D D ++ +  EL ++L +  L    LLV  NK D P A++   LTD++ L  +  R
Sbjct:   13 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNR 151          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 46/140 (32.86%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  228 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGREVC 647
            +++ L ++GL NAGKT+    +  G + ED+ PTVGF+   + +G   + ++DLGG  R R +W+ Y      +++VVD++D + +  ++  + ++L  P +SG P+LVL NK DK GAL +  + + + L+ +     C
Sbjct:   20 RKVTLVMVGLDNAGKTATAKGIQ-GEHPEDVAPTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKC 158          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 54/136 (39.71%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  237 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGREV 644
            ++  +GL NAGKT+L++++     +  M PT+     ++  GNV    +DLGG  + R +W  Y   V+ IVY+VD  D + LS S++EL  LL    L+ +P L+LGNKID PGA+S+  L   +GL   TG+ V
Sbjct:   22 KMLFLGLDNAGKTTLLHMLKNDRLAV-MQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQTTGKGV 156          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 3
Query:  207 SAASFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            S+   + +  +L  +GL NAGKT+L++++     +  + PT+     ++  G+V    +DLGG  + R +W+ Y   V+ IV++VDAADP+  + S++EL  L     LS +P L+LGNKID P A+ +  L   +GL + TG++
Sbjct:   12 SSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYNTTGKD 155          
BLAST of FC920262 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.128e-20
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  219 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITGRE 641
            F  +EM + ++GL  AGKT+++  +  G      IPT+GFN+  VT  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D + IS+SEL  +L +  L    L+V  NK D   A++   + + +GL ++  R+
Sbjct:   13 FGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRK 152          
The following BLAST results are available for this feature:
BLAST of FC920262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
ARF1_DICDI3.006e-2034.87ADP-ribosylation factor 1 OS=Dictyostelium discoid... [more]
SAR1_YARLI3.926e-2035.71Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_PICPG3.926e-2037.93Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
ARL1_HUMAN3.926e-2036.17ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARFK_DICDI3.926e-2033.77ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARF2_DROME3.926e-2034.29ADP-ribosylation factor 2 OS=Drosophila melanogast... [more]
AR13B_MOUSE3.926e-2032.86ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
SAR1_SCHPO5.128e-2039.71Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1_PICST5.128e-2035.17Small COPII coat GTPase SAR1 OS=Pichia stipitis GN... [more]
ARL1_BOVIN5.128e-2036.17ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionC32006A09EF RVDevelop1 Citrus clementina cDNA clone C32006A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920262 ID=FC920262; Name=FC920262; organism=Citrus clementina; type=EST; length=654bp
GATACCATATTCATTCAAGTTACGTATATTTGGTCAGTTTGTGGGAACGT
ACGAATACGGTAAATCAGTAGACGCAAGCGAAGGAGGAAGCTTCATCAGT
GGGGGGTCAATTCAAGGCTTAGACCTCAATTGGTTTCTGATTCTGTGATC
ATCGTCATCACCATCATCATTATCAATGGGATTGTGGGAAGCTTTTCTGA
ATTGGCTCCGCAGCCTCTTTTTTTAAACAGGAAATGGAGCTGTCCCTGAT
TGGACTTCAGAATGCTGGAAAGACCTCACTTGTAAATGTTGTTGCTACTG
GTGGATATAGCGAGGACATGATCCCTACGGTCGGATTCAACATGAGGAAA
GTGACAAAAGGAAATGTTACAATTAAGCTTTGGGATCTTGGAGGTCAACC
TAGATTCCGCAGTATGTGGGAGCGGTATTGCCGGGCAGTTTCTGCTATTG
TTTATGTGGTTGATGCTGCTGATCCTGACAACCTGAGCATTTCAAGAAGT
GAACTTCATGATTTGCTGAACAAACCCTCACTTAGTGGTATCCCTTTACT
GGTGCTAGGGAACAAGATTGACAAACCCGGAGCTCTATCTAAACAGGCTT
TAACTGATGAAATGGGACTAAAATCCATCACCGGCAGAGAAGTTTGCTGC
TTTA
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