FC920265

Overview
NameFC920265
Unique NameFC920265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12558 contig Ccv1_Contig12558:133..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL ++ +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVS 252          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL ++ +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVS 252          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 63/217 (29.03%), Postives = 106/217 (48.85%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL ++ +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +SPL  G  S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVS 252          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: AAD4_YEAST (Probable aryl-alcohol dehydrogenase AAD4 OS=Saccharomyces cerevisiae GN=AAD4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 54/189 (28.57%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  173 SGITLLDTSDIYGPHTNEILLGKALKGG-MRERVELATKFGISYADGKREIRGDPAY---------ARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRA------HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVE 691
            +G   +DT++ Y    +EI +G+ +K   +R+++ +ATKF   Y   K E+ G  +             +   SL++L  D ID+ Y H  D    IE  +  L  LV++GK+ Y+G+S+  A  +  A      H   P +  Q +W++ +RD E +I+P  R  G+ +  +  +G G F S   + E
Sbjct:   19 AGGNCIDTANSYQNEESEIWIGEWMKSRKLRDQIVIATKFTGDYK--KYEVGGGKSANYCGNHKHSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSIYQGKWNVLNRDFERDIIPMARHFGMALAPWDVMGGGRFQSKKAMEE 205          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: AAD14_YEAST (Putative aryl-alcohol dehydrogenase AAD14 OS=Saccharomyces cerevisiae GN=AAD14 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 64/236 (27.12%), Postives = 108/236 (45.76%), Query Frame = 2
Query:   44 RIKLGSQGLEVSAQGLGCMGM----SAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG-MRERVELATKFGISYADGKREIRGDPAY---------ARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRA------HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFSSGPKLVE 691
            R+   + G+ VS   LG   +    S F G    E     L+     +G   +DT++ Y    +EI +G+ +    +R+++ +ATKF   Y   K E+ G  +             +   SL++L  D ID+ Y H  D    IE  +  L  LV++GK+ Y+G+S+  A  +  A      H   P +  Q +W++ +RD E +I+P  R  G+ +  +  +G G F S   + E
Sbjct:   19 RVLSKTAGIRVSPLILGGASIGDAWSGFMGSMNKEQ-AFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMASRKLRDQIVIATKFTGDYK--KYEVGGGKSANYCGNHKRSLHVSVRDSLRKLQTDWIDILYIHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSVYQGKWNVLNRDFERDIIPMARHFGMALAPWDVMGGGRFQSKKAMEE 251          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: YI7E_SCHPO (Putative aryl-alcohol dehydrogenase C977.14c OS=Schizosaccharomyces pombe GN=SPAC977.14c PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 66/244 (27.05%), Postives = 106/244 (43.44%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPK--------PESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELA--------------------TKFGISYADGKREIRGDPAYARA----ACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASA------STIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG+ GL+VS   LGCM     YG  +         E ++  ++  A ++GI   DT++ Y    +E L+GK ++     R  +                     +  G+ + D   E+      +R     A E S+KRL    ID+   HR D  V  E  +  L  +VE GK++YIG S                H  H   ++Q   +L  R+ E E++P C++ G+G++ +SPL RG  +
Sbjct:   12 LGNSGLKVSKLILGCMS----YGKKEYWEDWVLEDEEEVFKIMKAAYDAGIRTFDTANCYSAGVSEELVGKFIRKYEIPRSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFLDSP-ELANQCGLSRKHIFDAVEDSVKRLGT-YIDVLQIHRYDPHVSAEEVMRALNDVVESGKVRYIGASTMRCYQFIELQNTAEKHGWHKFISMQNYHNLLYREEEREMIPYCQKTGVGLIPWSPLARGLLT 249          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: YEZB_SCHPO (Uncharacterized oxidoreductase C3A11.11c OS=Schizosaccharomyces pombe GN=SPAC3A11.11c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 57/193 (29.53%), Postives = 96/193 (49.74%), Query Frame = 2
Query:  125 PKPESDMIALIHHAINSGITLLDTSDIYG---PHTNEILLGKALKG--GMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRL-----DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAE-IVPTCRELGIGIVAYSPLGRGFFS 670
            P P+ +   ++++A++ G +  D  + YG   P  N  LL +  +      ++V L+ K   ++      + G     R     S+K +      +  IDLY    ID   PIE T+  LK+ V+ G I+ IGL E S   I+RAH+V  I A+++ +S+  R++E   +   C +L I +VA+SPL  G  +
Sbjct:   25 PVPDEEAFRIMNYALSHGCSFWDAGEFYGLSEPLANLQLLSRYFQKFPDSIDKVFLSVKG--AFDPETHRVHG----TRECITKSIKTVRETLKKVKTIDLYQCAAIDPDTPIEETMACLKEFVDSGDIRCIGLCEPSVEEIKRAHSVVRIAAIEVHYSMLFREIEYNGVKKLCHDLSIPLVAHSPLAHGLLT 211          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB_SCHPO (Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 64/217 (29.49%), Postives = 100/217 (46.08%), Query Frame = 2
Query:   53 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRGDPAYARAACE---ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAH-------AVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG  GL+VSA  LG  G   +             +  A + GI   DT++IY    +E ++GKA+K    +R E      + +  G +         +   E   ASLKRL +  +D+   HR D  VP+E  +    +L+++GK  Y G SE SA  I  AH        + P+ A Q +++  +RD  E +++P  +  G G   +SPL  G  +
Sbjct:   18 LGRSGLKVSAFSLG--GWLTYGNEGYDVEHTKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWSAFEIEHAHHIATKYNLIAPV-ADQPQYNYLTRDHFEKDLLPLQQIYGYGATVWSPLKSGILT 231          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 61/221 (27.60%), Postives = 99/221 (44.80%), Query Frame = 2
Query:   38 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIA--LIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            +K   LG  GL VS     C+G+  +       SD +A  L+  A   G+ L DT+++Y     E  LGK LK     R        I +       RG    +       SL+RL +D +D+ + +R+D   P+E  +  +  ++ +G   Y G S  SA  I  A++V       P    Q E+ L+ R+ VE ++     ++G+G + +SPL  G  +
Sbjct:   71 MKYRNLGKSGLRVS-----CLGLGTWVTFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVETQLPELYHKIGVGSMTWSPLACGLIT 286          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: YCSN_BACSU (Uncharacterized oxidoreductase ycsN OS=Bacillus subtilis GN=ycsN PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.335e-13
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  134 ESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGK--ALKGGMRERVELATKFGISYADGKR------EIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPT---CRELGIGIVAYSPLGRG 661
            ++++++LI   I+ GIT  D +DIYG +T E L G   AL  G+RE +EL TK GI     +R            ++  A+ E SL  L  D ID+   HR D  +  E      + L   GK++Y G+S       R   +  P   V  +  L + ++E  +  T   C+E  I  +A+SPL  G
Sbjct:   29 DAELLSLIEWCIDHGITTFDHADIYGGYTCEKLFGNALALSPGLRENIELVTKCGIVLESPERPAHRSHHYNTSKSHILASVEQSLMNLRTDYIDMLLIHRPDPLMDPEGVAEAFQALKCSGKVRYFGVSNFKDHQYRMLESYLPEKLVTNQIELSAYELENMLDGTLNLCQEKRIPPMAWSPLAGG 215          
The following BLAST results are available for this feature:
BLAST of FC920265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
KCAB2_BOVIN4.256e-1529.03Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT5.558e-1529.03Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE5.558e-1529.03Voltage-gated potassium channel subunit beta-2 OS=... [more]
AAD4_YEAST9.481e-1528.57Probable aryl-alcohol dehydrogenase AAD4 OS=Saccha... [more]
AAD14_YEAST1.238e-1427.12Putative aryl-alcohol dehydrogenase AAD14 OS=Sacch... [more]
YI7E_SCHPO4.705e-1427.05Putative aryl-alcohol dehydrogenase C977.14c OS=Sc... [more]
YEZB_SCHPO4.705e-1429.53Uncharacterized oxidoreductase C3A11.11c OS=Schizo... [more]
KCAB_SCHPO1.788e-1329.49Putative voltage-gated potassium channel subunit b... [more]
KCAB3_XENLA1.788e-1327.60Voltage-gated potassium channel subunit beta-3 OS=... [more]
YCSN_BACSU2.335e-1331.55Uncharacterized oxidoreductase ycsN OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC32006A12EF RVDevelop1 Citrus clementina cDNA clone C32006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920265 ID=FC920265; Name=FC920265; organism=Citrus clementina; type=EST; length=694bp
GGGGGGATATCAAAAAAAAAAAAAAACGGCGGGGGCAGTGAAGAGAATCA
AGCTTGGTTCACAAGGTCTAGAGGTTTCAGCACAAGGCTTAGGATGCATG
GGCATGTCCGCCTTCTACGGGCCCCCGAAGCCAGAATCCGACATGATCGC
CTTGATCCACCATGCCATTAACAGTGGCATCACTCTACTTGACACCTCCG
ATATTTACGGGCCCCACACCAATGAAATCCTTCTGGGAAAGGCTTTGAAG
GGAGGAATGAGGGAAAGAGTTGAATTGGCTACTAAATTTGGTATCAGCTA
TGCGGATGGTAAAAGGGAAATTCGCGGTGACCCGGCTTATGCGAGAGCTG
CATGTGAGGCCAGCTTGAAGCGTCTGGATATTGATTGTATTGATCTTTAT
TACCAACATCGCATTGATACACGAGTTCCCATTGAAGTCACGATTGGAGA
ACTCAAGAAACTAGTTGAAGAGGGTAAGATAAAGTATATAGGTCTGTCCG
AGGCTTCTGCCTCAACAATTAGACGAGCTCATGCTGTCCATCCAATAACA
GCTGTGCAGTTGGAATGGTCCTTGTGGTCACGAGATGTGGAGGCAGAGAT
TGTTCCTACTTGCAGGGAACTTGGCATTGGAATTGTTGCATACAGTCCTC
TAGGACGAGGATTTTTTTCCTCAGGGCCTAAGTTGGTTGAAAGC
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