FC920265

Overview
NameFC920265
Unique NameFC920265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB3_RAT (Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 61/234 (26.07%), Postives = 102/234 (43.59%), Query Frame = 2
Query:    2 GGYQKKKKTAGAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKAL--KGGMRERVELATK-FGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFSS 673
            G  ++       +K   LG  GL VS  GLG       +G    +     L+  A   G+ L DT+++Y     E  LG  L  KG  R    + TK F    A+ +R +     +     + SL RL ++ +D+ + +R D   P+E  +  +  ++ +G   Y G S  SA+ I  A+++       P    Q E   + R+ VE ++     ++G+G V +SPL     +S
Sbjct:   66 GALRESTGRGTGMKYRNLGKSGLRVSCLGLGTW---VTFGSQISDETAEDLLTVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGL--SRKHIIEGLQGSLDRLQLEYVDIVFANRSDPSSPMEEIVRAMTYVINQGLALYWGTSRWSAAEIMEAYSMARQFNLIPPVCEQAENHFFQREKVEMQLPELYHKIGVGSVTWSPLACSLITS 294          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: KCAB3_HUMAN (Voltage-gated potassium channel subunit beta-3 OS=Homo sapiens GN=KCNAB3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 60/234 (25.64%), Postives = 101/234 (43.16%), Query Frame = 2
Query:    2 GGYQKKKKTAGAVKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKAL--KGGMRERVELATK-FGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYSPLGRGFFSS 673
            G  ++       +K   LG  GL VS  GLG           +   D++ +   A   G+ L DT+++Y     E  LG  L  KG  R    + TK F    A+ +R +     +       SL+RL +  +D+ + +R D   P+E  +  +  ++ +G   Y G S   A+ I  A+++       P    Q E  L+ R+ VE ++     ++G+G V + PL  G  +S
Sbjct:   66 GALRESTGRGTGMKYRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDVLTV---AYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGL--SRKHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAAEIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLACGLITS 294          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: ARK73_HUMAN (Aflatoxin B1 aldehyde reductase member 3 OS=Homo sapiens GN=AKR7A3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 52/176 (29.55%), Postives = 82/176 (46.59%), Query Frame = 2
Query:  167 INSGITLLDTSDIYGPHTNEILLGKA--LKGGMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE------ASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            +  G T +DT+ +Y    +E +LG      GG   RV++ TK    + +  +     P   R   E SLKRL    +DL+Y H  D   P+E T+    +L +EGK   +GLS       A   T+ +++     T  Q  ++  +R VE E+ P  R  G+   A++PL  G  +
Sbjct:   36 LERGHTEIDTAFVYSEGQSETILGGLGLRLGGSDCRVKIDTKAIPLFGNSLK-----PDSLRFQLETSLKRLQCPRVDLFYLHMPDHSTPVEETLRACHQLHQEGKFVELGLSNYAAWEVAEICTLCKSNGWILPTVYQGMYNAITRQVETELFPCLRHFGLRFYAFNPLAGGLLT 206          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: ARK72_RAT (Aflatoxin B1 aldehyde reductase member 2 OS=Rattus norvegicus GN=Akr7a2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 63/202 (31.19%), Postives = 94/202 (46.53%), Query Frame = 2
Query:   89 LGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRE-RVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE------ASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG M M    G     S   A +   +  G+  LDT+ +Y    +E +LG    G G  +  V++ATK   +  DGK      P   R+  E SLKRL    +DL+Y H  D   PI  T+   ++L +EGK   +GLS       A   T+ +++     T  Q  ++  +R VE E++P  R  G+   AY+PL  G  +
Sbjct:   50 LGTMEM----GRRMDASASAATVRAFLERGLNELDTAFMYCDGQSESILGSLGLGLGSGDCTVKIATK--ANPWDGKSL---KPDSVRSQLETSLKRLQCPRVDLFYLHAPDHGTPIVETLQACQQLHQEGKFVELGLSNYASWEVAEIYTLCKSNGWILPTVYQGMYNATTRQVETELLPCLRYFGLRFYAYNPLAGGLLT 242          
BLAST of FC920265 vs. ExPASy Swiss-Prot
Match: ARK72_MOUSE (Aflatoxin B1 aldehyde reductase member 2 OS=Mus musculus GN=Akr7a2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 63/202 (31.19%), Postives = 95/202 (47.03%), Query Frame = 2
Query:   89 LGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKG-GMRE-RVELATKFGISYADGKREIRGDPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSE------ASASTIRRAHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYSPLGRGFFS 670
            LG M M    G     S   A +   +  G + LDT+ +Y    +E +LG    G G  +  V++ATK   +  +GK      P   R+  E SLKRL    +DL+Y H  D   P+E T+    +L +EGK   +GLS       A   T+ +++     T  Q  ++  +R VEAE++P  R  G+   AY+PL  G  +
Sbjct:   50 LGTMEM----GRRMDASASAASVRAFLERGHSELDTAFMYCDGQSENILGGLGLGLGSGDCTVKIATK--ANPWEGKSL---KPDSVRSQLETSLKRLQCPRVDLFYLHAPDHSTPVEETLRACHQLHQEGKFVELGLSNYASWEVAEICTLCKSNGWILPTVYQGMYNATTRQVEAELLPCLRHFGLRFYAYNPLAGGLLT 242          
The following BLAST results are available for this feature:
BLAST of FC920265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
KCAB3_RAT2.186e-1126.07Voltage-gated potassium channel subunit beta-3 OS=... [more]
KCAB3_HUMAN3.728e-1125.64Voltage-gated potassium channel subunit beta-3 OS=... [more]
ARK73_HUMAN4.869e-1129.55Aflatoxin B1 aldehyde reductase member 3 OS=Homo s... [more]
ARK72_RAT6.359e-1131.19Aflatoxin B1 aldehyde reductase member 2 OS=Rattus... [more]
ARK72_MOUSE6.359e-1131.19Aflatoxin B1 aldehyde reductase member 2 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC32006A12EF RVDevelop1 Citrus clementina cDNA clone C32006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920265 ID=FC920265; Name=FC920265; organism=Citrus clementina; type=EST; length=694bp
GGGGGGATATCAAAAAAAAAAAAAAACGGCGGGGGCAGTGAAGAGAATCA
AGCTTGGTTCACAAGGTCTAGAGGTTTCAGCACAAGGCTTAGGATGCATG
GGCATGTCCGCCTTCTACGGGCCCCCGAAGCCAGAATCCGACATGATCGC
CTTGATCCACCATGCCATTAACAGTGGCATCACTCTACTTGACACCTCCG
ATATTTACGGGCCCCACACCAATGAAATCCTTCTGGGAAAGGCTTTGAAG
GGAGGAATGAGGGAAAGAGTTGAATTGGCTACTAAATTTGGTATCAGCTA
TGCGGATGGTAAAAGGGAAATTCGCGGTGACCCGGCTTATGCGAGAGCTG
CATGTGAGGCCAGCTTGAAGCGTCTGGATATTGATTGTATTGATCTTTAT
TACCAACATCGCATTGATACACGAGTTCCCATTGAAGTCACGATTGGAGA
ACTCAAGAAACTAGTTGAAGAGGGTAAGATAAAGTATATAGGTCTGTCCG
AGGCTTCTGCCTCAACAATTAGACGAGCTCATGCTGTCCATCCAATAACA
GCTGTGCAGTTGGAATGGTCCTTGTGGTCACGAGATGTGGAGGCAGAGAT
TGTTCCTACTTGCAGGGAACTTGGCATTGGAATTGTTGCATACAGTCCTC
TAGGACGAGGATTTTTTTCCTCAGGGCCTAAGTTGGTTGAAAGC
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