FC920275

Overview
NameFC920275
Unique NameFC920275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920275_ssr320 microsatellite FC920275_ssr320:320..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_ANASP (Probable 30S ribosomal protein PSRP-3 OS=Anabaena sp. (strain PCC 7120) GN=asr3168 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682
            + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK  LESK WIS    + LLN+ T++IN WQ+ G N
Sbjct:    3 KFILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN 80          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_NOSP7 (Probable 30S ribosomal protein PSRP-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F4413 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682
            + +LK +W+++N+ LA+DQ + G GT PL++YFFWPR DAWEELK  LESK WI+    + LLN+ T++IN WQ+ G N
Sbjct:    3 KFILKILWLDENVALAVDQIV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWITDLDRVELLNKATEVINYWQEEGRN 80          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_GUITH (Probable 30S ribosomal protein 3, chloroplastic OS=Guillardia theta GN=ycf65 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  443 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQ 670
            P+  LK +W++ N+ +A+DQ I G GT PL+ YFFWPR DAWE++K  LESKPWI +K  I LLN+ T++IN WQ+
Sbjct:    2 PKFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAELESKPWIEEKERIELLNKTTELINCWQE 76          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_EUGGA (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena granulata GN=ycf65 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 41/82 (50.00%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  440 KPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNL 685
            K  L+LKF+W+EK+I + LDQ + G    PL+++FFWP+KDAWEE+K  LES+ WI+Q   + LLN  T++IN WQ+   N+
Sbjct:    2 KKELILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMKNFLESQSWITQSDSVNLLNNITEVINFWQERDTNV 82          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNP6 (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1758_d PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            R  +K +W+ +N+ +A+DQ + G  T PL+ Y+FWPR DAWE+LKT LESK WI++   + LLNQ T++IN WQ+ G
Sbjct:   16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERVELLNQATEVINYWQEEG 91          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNE7 (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus elongatus (strain PCC 7942) GN=mut3G PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            R  +K +W+ +N+ +A+DQ + G  T PL+ Y+FWPR DAWE+LKT LESK WI++   + LLNQ T++IN WQ+ G
Sbjct:   16 RFTIKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERVELLNQATEVINYWQEEG 91          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_ACAM1 (Probable 30S ribosomal protein PSRP-3 OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_2922 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            + +LK +W+++N+ LA+DQ + G G+ PL+ YFFWPR DAWE LKT LE K WI +   I +LN+ T++IN WQ+ G
Sbjct:    3 KFILKVLWLDENVALAVDQVV-GNGSSPLTSYFFWPRNDAWENLKTELEKKTWIDEVERISILNKATEVINYWQEEG 78          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PROMA (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus GN=Pro_1593 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 2
Query:  437 EKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGNLT 688
            ++ R +LK +W+  N+ LA+DQ + G GT PL+ YFFWPR+DAWE LKT LE K WI+    + +LN+ T++IN WQ+ G   T
Sbjct:   27 DEGRFLLKILWLPDNVALAVDQIVGG-GTSPLTAYFFWPREDAWETLKTELEDKAWITDNERVEVLNKATEVINYWQEEGKGKT 109          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_EUGST (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena stellata GN=ycf65 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 39/73 (53.42%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  452 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQ 670
            +LKF+W+EK++ + LDQ I G  T P++++FFWP+ DAWEE+K  LE K WI Q  ++ILLNQ T++IN WQ+
Sbjct:    5 ILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVILLNQITEVINYWQE 76          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_TRIEI (Probable 30S ribosomal protein PSRP-3 OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_3451 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            + +LK +W++ N+ LA+DQ + G GT PL+ YFFWPR DAWE+LK  LE K WIS+   + LLN+ T+II+ WQ+ G
Sbjct:    3 KFILKVVWLDDNVALAVDQVV-GNGTSPLTCYFFWPRNDAWEQLKKELEGKHWISEADRVALLNKATEIISYWQEEG 78          
The following BLAST results are available for this feature:
BLAST of FC920275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_ANASP1.166e-2054.43Probable 30S ribosomal protein PSRP-3 OS=Anabaena ... [more]
RRP3_NOSP73.393e-2053.16Probable 30S ribosomal protein PSRP-3 OS=Nostoc pu... [more]
RRP3_GUITH4.431e-2055.26Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_EUGGA2.872e-1950.00Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_SYNP63.751e-1950.65Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_SYNE73.751e-1950.65Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_ACAM13.751e-1950.65Probable 30S ribosomal protein PSRP-3 OS=Acaryochl... [more]
RRP3_PROMA4.899e-1948.81Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_EUGST6.398e-1953.42Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_TRIEI8.357e-1951.95Probable 30S ribosomal protein PSRP-3 OS=Trichodes... [more]

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Properties
Property NameValue
Genbank descriptionC32006B11EF RVDevelop1 Citrus clementina cDNA clone C32006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920275 ID=FC920275; Name=FC920275; organism=Citrus clementina; type=EST; length=699bp
TCGCCGGGGGAACTGGTTGATAATAAACAAATCTGTGCTTGCTCTCCTTC
TCTTTGAAGAACACAAAATGTTATCATCAATGGCACTTCAATCTACTGTT
AATGGTGCATTCACCACACGCTCCTCATTCCCTTCCCAAAAACTCACTGT
CAAACCCACCAAAACCACCATTCTTCACCAAAATAGAACCAAACCCATTT
CAAGAAACCAAAGGCTCGTTGCTTTAGCAACCCCAGAATCACTCACAGCT
GAAGAAGCAACAACAACATCCACAGAGACCATCCCAGCAACCCCAGTAGA
AACTAAGGTCCAAACCAAATCTCTCTCTCCCTCTCTACATATGTGTGTTT
ATGTGTACTGTTTCACTTAATAAAAGTTGTGTGTTTTCTTTTTCTTTTCT
TCTGGGCAGAAGGCGGGGGTGTCAGTGAAGCAATTGGAGAAGCCAAGGCT
GGTATTGAAGTTTATATGGATGGAGAAGAACATTGGTCTAGCTCTTGACC
AGACGATACCTGGGTATGGCACCATTCCTTTGAGTCAATACTTCTTTTGG
CCGAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCTTGAGAGCAAACC
CTGGATTTCCCAGAAAATGATGATTATACTTCTAAATCAGGNCACTGATA
TTATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACTACTTAGTTGGA
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