FC920275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_CYAA5 (Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain ATCC 51142) GN=cce_1753 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19 Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 431 QLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQ 667 QLE PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW+ELK LE+K WI + I +LN+ T++IN WQ Sbjct: 9 QLE-PRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDELEAKHWILETERIEILNKATEVINYWQ 85
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJA (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0331 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18 Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 2 Query: 443 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676 P+ LK +W+E ++ +A+DQ + PL++YFFWPR DAWE+LK LESK WIS++ I LLNQ T++IN WQ G Sbjct: 2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTRYFFWPRDDAWEQLKAELESKTWISEEDRITLLNQATELINYWQNGG 78
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_GRATL (Probable 30S ribosomal protein 3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=ycf65 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18 Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 2 Query: 446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682 + K +W+E NI +A+D I G PL+ YFFWPR DAWEELK LESKPWI++ + LLN+ T+IIN WQ+ N Sbjct: 3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKVDLLNKTTEIINFWQEKEKN 80
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PROMP (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18 Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 2 Query: 416 GVSVKQLEKP---RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676 GV KP R ++K +W+ N+ LA+DQ + G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+ + +LN+ T++IN WQ+ G Sbjct: 17 GVPTGYTPKPDEGRFIIKILWLPDNVALAVDQIVGG-GSSPLTAYYFWPRDDAWEKLKSELENKSWITDNERVEILNKATEVINYWQEEG 105
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJB (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. GN=CYB_1711 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 2 Query: 443 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682 P+ LK +W+E ++ +A+DQ + PL+ YFFWPR DAWE+LK LESK WIS+ I LLN+ T++IN WQ G N Sbjct: 2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTHYFFWPRDDAWEQLKAELESKTWISEVDRIELLNRATELINYWQNGGRN 80
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNY3 (Probable 30S ribosomal protein PSRP-3 OS=Synechocystis sp. (strain PCC 6803) GN=slr0923 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17 Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 2 Query: 452 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQ 667 +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++LK LE+K WI++ I +LNQ T++IN WQ Sbjct: 15 ILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQ 85
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PROMM (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT_1454 PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17 Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 2 Query: 398 SSGQKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676 + G +G + K ++ R +LK +W+ N+ LA+DQ + G G PL+ YFFWPR+DAWE LK LE K WI+ + +LN+ T++IN WQ+ G Sbjct: 15 ADGVPSGYTPKA-DEGRFLLKILWLPDNVALAVDQIVGG-GPSPLTAYFFWPREDAWETLKGELEGKSWITDNERVEVLNKATEVINYWQEEG 105
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_EUGVI (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis GN=ycf65 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17 Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 2 Query: 446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQ 670 + VLKF+W+++++ ++LDQ I G PL++++FWP+ DAWEE++ LESK WI+ I+LLNQ T+IIN WQ+ Sbjct: 3 KFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESILLLNQVTEIINDWQE 76
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMU (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena mutabilis GN=ycf65 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 2 Query: 446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQS 673 R VLKF+ ++K I + LDQ I PL++YFFWP++DAWE++K +++ WI K + +LN+ T++IN W++S Sbjct: 3 RFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAVNILNRITEVINFWEES 78
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_CYACA (Probable 30S ribosomal protein 3, chloroplastic OS=Cyanidium caldarium GN=ycf65 PE=3 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13 Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2 Query: 455 LKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQS 673 +K +W+ NI +A+D+ I G P++ Y+FWPR DAWE+LK L+S+P + K +++LNQ T II+ WQ++ Sbjct: 6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVILNQVTRIIDYWQEN 77 The following BLAST results are available for this feature:
BLAST of FC920275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920275 ID=FC920275; Name=FC920275; organism=Citrus clementina; type=EST; length=699bpback to top |