FC920275

Overview
NameFC920275
Unique NameFC920275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920275_ssr320 microsatellite FC920275_ssr320:320..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_CYAA5 (Probable 30S ribosomal protein PSRP-3 OS=Cyanothece sp. (strain ATCC 51142) GN=cce_1753 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  431 QLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQ 667
            QLE PR +LK +W++ N+ +A+DQ + G GT PL+ YFFWPR DAW+ELK  LE+K WI +   I +LN+ T++IN WQ
Sbjct:    9 QLE-PRFILKVLWLDANVAIAVDQVV-GKGTSPLTAYFFWPRNDAWQELKDELEAKHWILETERIEILNKATEVINYWQ 85          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJA (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0331 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  443 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            P+  LK +W+E ++ +A+DQ +      PL++YFFWPR DAWE+LK  LESK WIS++  I LLNQ T++IN WQ  G
Sbjct:    2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTRYFFWPRDDAWEQLKAELESKTWISEEDRITLLNQATELINYWQNGG 78          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_GRATL (Probable 30S ribosomal protein 3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=ycf65 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682
            +   K +W+E NI +A+D  I G    PL+ YFFWPR DAWEELK  LESKPWI++   + LLN+ T+IIN WQ+   N
Sbjct:    3 KFTFKILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKVDLLNKTTEIINFWQEKEKN 80          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PROMP (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM1440 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  416 GVSVKQLEKP---RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            GV      KP   R ++K +W+  N+ LA+DQ + G G+ PL+ Y+FWPR DAWE+LK+ LE+K WI+    + +LN+ T++IN WQ+ G
Sbjct:   17 GVPTGYTPKPDEGRFIIKILWLPDNVALAVDQIVGG-GSSPLTAYYFWPRDDAWEKLKSELENKSWITDNERVEILNKATEVINYWQEEG 105          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNJB (Probable 30S ribosomal protein PSRP-3 OS=Synechococcus sp. GN=CYB_1711 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  443 PRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSGGN 682
            P+  LK +W+E ++ +A+DQ +      PL+ YFFWPR DAWE+LK  LESK WIS+   I LLN+ T++IN WQ  G N
Sbjct:    2 PKFALKALWLENDLAIAVDQVV-AKNRSPLTHYFFWPRDDAWEQLKAELESKTWISEVDRIELLNRATELINYWQNGGRN 80          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_SYNY3 (Probable 30S ribosomal protein PSRP-3 OS=Synechocystis sp. (strain PCC 6803) GN=slr0923 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 2
Query:  452 VLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQ 667
            +LK +W+++N+ +A+DQ + G GT PL+ YFFWPR DAW++LK  LE+K WI++   I +LNQ T++IN WQ
Sbjct:   15 ILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINVLNQATEVINFWQ 85          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_PROMM (Probable 30S ribosomal protein PSRP-3 OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT_1454 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  398 SSGQKAGVSVKQLEKPRLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQSG 676
            + G  +G + K  ++ R +LK +W+  N+ LA+DQ + G G  PL+ YFFWPR+DAWE LK  LE K WI+    + +LN+ T++IN WQ+ G
Sbjct:   15 ADGVPSGYTPKA-DEGRFLLKILWLPDNVALAVDQIVGG-GPSPLTAYFFWPREDAWETLKGELEGKSWITDNERVEVLNKATEVINYWQEEG 105          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_EUGVI (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena viridis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQ 670
            + VLKF+W+++++ ++LDQ I G    PL++++FWP+ DAWEE++  LESK WI+    I+LLNQ T+IIN WQ+
Sbjct:    3 KFVLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESILLLNQVTEIINDWQE 76          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMU (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena mutabilis GN=ycf65 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  446 RLVLKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQS 673
            R VLKF+ ++K I + LDQ I      PL++YFFWP++DAWE++K  +++  WI  K  + +LN+ T++IN W++S
Sbjct:    3 RFVLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAVNILNRITEVINFWEES 78          
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_CYACA (Probable 30S ribosomal protein 3, chloroplastic OS=Cyanidium caldarium GN=ycf65 PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  455 LKFIWMEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQS 673
            +K +W+  NI +A+D+ I G    P++ Y+FWPR DAWE+LK  L+S+P +  K  +++LNQ T II+ WQ++
Sbjct:    6 IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVILNQVTRIIDYWQEN 77          
The following BLAST results are available for this feature:
BLAST of FC920275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_CYAA58.357e-1953.16Probable 30S ribosomal protein PSRP-3 OS=Cyanothec... [more]
RRP3_SYNJA1.862e-1851.28Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_GRATL1.862e-1851.90Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_PROMP5.417e-1844.44Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_SYNJB9.239e-1850.00Probable 30S ribosomal protein PSRP-3 OS=Synechoco... [more]
RRP3_SYNY31.207e-1751.39Probable 30S ribosomal protein PSRP-3 OS=Synechocy... [more]
RRP3_PROMM1.576e-1744.09Probable 30S ribosomal protein PSRP-3 OS=Prochloro... [more]
RRP3_EUGVI4.585e-1749.33Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_EUGMU4.292e-1543.42Probable 30S ribosomal protein 3, chloroplastic OS... [more]
RRP3_CYACA1.057e-1343.84Probable 30S ribosomal protein 3, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionC32006B11EF RVDevelop1 Citrus clementina cDNA clone C32006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920275 ID=FC920275; Name=FC920275; organism=Citrus clementina; type=EST; length=699bp
TCGCCGGGGGAACTGGTTGATAATAAACAAATCTGTGCTTGCTCTCCTTC
TCTTTGAAGAACACAAAATGTTATCATCAATGGCACTTCAATCTACTGTT
AATGGTGCATTCACCACACGCTCCTCATTCCCTTCCCAAAAACTCACTGT
CAAACCCACCAAAACCACCATTCTTCACCAAAATAGAACCAAACCCATTT
CAAGAAACCAAAGGCTCGTTGCTTTAGCAACCCCAGAATCACTCACAGCT
GAAGAAGCAACAACAACATCCACAGAGACCATCCCAGCAACCCCAGTAGA
AACTAAGGTCCAAACCAAATCTCTCTCTCCCTCTCTACATATGTGTGTTT
ATGTGTACTGTTTCACTTAATAAAAGTTGTGTGTTTTCTTTTTCTTTTCT
TCTGGGCAGAAGGCGGGGGTGTCAGTGAAGCAATTGGAGAAGCCAAGGCT
GGTATTGAAGTTTATATGGATGGAGAAGAACATTGGTCTAGCTCTTGACC
AGACGATACCTGGGTATGGCACCATTCCTTTGAGTCAATACTTCTTTTGG
CCGAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCTTGAGAGCAAACC
CTGGATTTCCCAGAAAATGATGATTATACTTCTAAATCAGGNCACTGATA
TTATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACTACTTAGTTGGA
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