FC920275

Overview
NameFC920275
Unique NameFC920275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920275_ssr320 microsatellite FC920275_ssr320:320..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920275 vs. ExPASy Swiss-Prot
Match: RRP3_EUGMY (Probable 30S ribosomal protein 3, chloroplastic OS=Euglena myxocylindracea GN=ycf65 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:  458 KFIW----MEKNIGLALDQTIPGYGTIPLSQYFFWPRKDAWEELKTTLESKPWISQKMMIILLNQXTDIINLWQQ 670
            KF+W    +E  I + LDQ +    T P+++YFFWP+ DAW+EL   LESKPWI+    I +LN  TD+IN W +
Sbjct:    3 KFVWKVVCLENKIAICLDQQLADK-TSPVTEYFFWPQSDAWDELNKLLESKPWITLSNRIFVLNILTDLINYWDE 76
The following BLAST results are available for this feature:
BLAST of FC920275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RRP3_EUGMY1.381e-1346.67Probable 30S ribosomal protein 3, chloroplastic OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006B11EF RVDevelop1 Citrus clementina cDNA clone C32006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920275 ID=FC920275; Name=FC920275; organism=Citrus clementina; type=EST; length=699bp
TCGCCGGGGGAACTGGTTGATAATAAACAAATCTGTGCTTGCTCTCCTTC
TCTTTGAAGAACACAAAATGTTATCATCAATGGCACTTCAATCTACTGTT
AATGGTGCATTCACCACACGCTCCTCATTCCCTTCCCAAAAACTCACTGT
CAAACCCACCAAAACCACCATTCTTCACCAAAATAGAACCAAACCCATTT
CAAGAAACCAAAGGCTCGTTGCTTTAGCAACCCCAGAATCACTCACAGCT
GAAGAAGCAACAACAACATCCACAGAGACCATCCCAGCAACCCCAGTAGA
AACTAAGGTCCAAACCAAATCTCTCTCTCCCTCTCTACATATGTGTGTTT
ATGTGTACTGTTTCACTTAATAAAAGTTGTGTGTTTTCTTTTTCTTTTCT
TCTGGGCAGAAGGCGGGGGTGTCAGTGAAGCAATTGGAGAAGCCAAGGCT
GGTATTGAAGTTTATATGGATGGAGAAGAACATTGGTCTAGCTCTTGACC
AGACGATACCTGGGTATGGCACCATTCCTTTGAGTCAATACTTCTTTTGG
CCGAGAAAAGATGCATGGGAAGAGCTCAAGACAACTCTTGAGAGCAAACC
CTGGATTTCCCAGAAAATGATGATTATACTTCTAAATCAGGNCACTGATA
TTATCAATTTGTGGCAGCAGAGCGGTGGCAATCTTACTACTTAGTTGGA
back to top