FC920277

Overview
NameFC920277
Unique NameFC920277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11919 contig Ccv1_Contig11919:332..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920277 vs. ExPASy Swiss-Prot
Match: DFRA_HORVU (Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.437e-22
Identity = 59/154 (38.31%), Postives = 95/154 (61.69%), Query Frame = 2
Query:   56 KEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASH---LFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPPTLDDPKDPEKELLIPAVQGTLNVLEAAKKFG-VRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFC 505
            K  V VTGA+GF+G+W+V  LL+ GYT + A +    +      L  LPGA K  + +++A++ ++ + + AI GC GVFH+A+P   D  +DPE E++ P V+G L+++ A K+ G V+R+V TSS  S+  N         D+ +W+D+D+C
Sbjct:    5 KGPVVVTGASGFVGSWLVMKLLQAGYT-VRATVRDPANVEKTKPLLELPGA-KERLSIWKADLSEDGSFNEAIAGCTGVFHVATPMDFDS-QDPENEVIKPTVEGMLSIMRACKEAGTVKRIVFTSSAGSV--NIEERPRPAYDQDNWSDIDYC 153          
BLAST of FC920277 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.281e-20
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 2
Query:   50 PEKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGT--DASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPPTLDDPKDPEKELLIPAVQGTLNVLEA-AKKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDF 502
            P    VCVTGA GFIG+W+V  LLE+GYT       PG      HL  LP A   N+ +++A++    +   AI+GC+GVFHLA+    D   DPE E++ P + G LN++++  +   V++ + T+S  ++  N    Q  V DET  +D+DF
Sbjct:   15 PSSTTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKA-DTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDS-VDPENEVIKPTIDGMLNIIKSCVQAKTVKKFIFTTSGGTV--NVEEHQKPVYDETDSSDMDF 164          
BLAST of FC920277 vs. ExPASy Swiss-Prot
Match: DFRA_MEDSA (Dihydroflavonol-4-reductase (Fragment) OS=Medicago sativa GN=DFR1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.530e-16
Identity = 50/141 (35.46%), Postives = 85/141 (60.28%), Query Frame = 2
Query:   95 GTWVVRTLLEKGYTNIHAAIFPGTD---ASHLFSLPGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPPTLDDPKDPEKELLIPAVQGTLNVLEAA-KKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDFC 505
            G+W+V  L+E GY  + A +    +    S L  LPGA K  + +++A++ +  +   AI+GC GVFH+A+P   +  KDPE E++ P ++G L++++A  K   VRR++ TSS  ++  N    Q  + DE+ W+D++FC
Sbjct:    1 GSWLVMRLMEPGYM-VRATVRDPENLKKVSPLLELPGA-KSKLSIWKADLGEEGSFDEAIKGCTGVFHVATPMDFES-KDPENEMIKPTIKGVLDIMKACLKAKTVRRLIYTSSAGTL--NVTEDQKPLWDESCWSDVEFC 136          
BLAST of FC920277 vs. ExPASy Swiss-Prot
Match: BAN_ARATH (Leucoanthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 44/147 (29.93%), Postives = 89/147 (60.54%), Query Frame = 2
Query:   68 CVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASHLFSLPGATKL-NVRVYEANILDNEAISRAIEGCKGVFHLASPPTLDDPKDPEKELLIPAVQGTLNVLEAA-KKFGVRRVVLTSSISSIVPNPNWPQGKVIDETSWTDLDF 502
            CV G  G + + +++ LL+ GY  ++  +    +   +  L    +L ++++++A++ D ++   +  GC+ +FH+A+P      +DPEK+++ PA+QG +NVL++  K   V+RV+ TSS +++  N     G V++E +WTD++F
Sbjct:   14 CVIGGTGNLASILIKHLLQSGY-KVNTTVRDPENEKKIAHLRKLQELGDLKIFKADLTDEDSFESSFSGCEYIFHVATPINFKS-EDPEKDMIKPAIQGVINVLKSCLKSKSVKRVIYTSSAAAVSINNLSGTGIVMNEENWTDVEF 158          
BLAST of FC920277 vs. ExPASy Swiss-Prot
Match: ALD2_SPOSA (Aldehyde reductase 2 OS=Sporobolomyces salmonicolor PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 62/156 (39.74%), Postives = 83/156 (53.21%), Query Frame = 2
Query:   50 PEKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASHLFSL--------PGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPPTLDDPKDPEKELLIPAVQGTLNVLEAAKKF-GVRRVVLTSS-ISSIVPNPNWPQGKVIDETSW 487
            PE  +V VTGANGF+ + VV  LLE GY     A      AS L +L        PG  +    V E ++L   A    I+G  GV H+AS  +  +  D   E++ PA+ GTLN L AA     V+R VLTSS +S+++P PN  +G  +DE SW
Sbjct:   10 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTA----RSASKLANLQKRWDAKYPG--RFETAVVE-DMLKQGAYDEVIKGAAGVAHIASVVSFSNKYD---EVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPN-VEGIYLDEKSW 154          
BLAST of FC920277 vs. ExPASy Swiss-Prot
Match: YGD9_YEAST (Putative uncharacterized oxidoreductase YGL039W OS=Saccharomyces cerevisiae GN=YGL039W PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 2
Query:   53 EKEVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASHLFSLPGATKLNVRVYEANILDN---EAISRAIEGCKGVFHLASPPTLDDPKDPEKELLIPAVQGTLNVLEAAKKFG---VRRVVLTSSISSIV-PNPNWPQGKVIDETSW 487
            EK VV V+GA GFI   VV  LL+ GY  I +      +   L        L++ + E     N   +   +  +  K V H+ASP   +   D EK+LLIPAV GT ++LEA K +    V +VV+TSS++++  P        V++E SW
Sbjct:    4 EKTVVFVSGATGFIALHVVDDLLKTGYKVIGSGRSQEKNDGLLKKFKSNPNLSMEIVEDIAAPNAFDKVFQKHGKEIKVVLHIASPVHFNTT-DFEKDLLIPAVNGTKSILEAIKNYAADTVEKVVITSSVAALASPGDMKDTSFVVNEESW 154          
BLAST of FC920277 vs. ExPASy Swiss-Prot
Match: YKJ7_SCHPO (Putative uncharacterized oxidoreductase C513.07 OS=Schizosaccharomyces pombe GN=SPAC513.07 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 47/151 (31.13%), Postives = 77/151 (50.99%), Query Frame = 2
Query:   59 EVVCVTGANGFIGTWVVRTLLEKGYTNIHAAIFPGTDASHLFSL-PGATKLNVRVYEANILDNEAISRAIEGCKGVFHLASPPTLDDPKDPEKELLIPAVQGTLNVLEAAKKF-GVRRVVLTSSISSIVPNPNWP-QGKVIDETSWTDLDF 502
            ++V VTG  GFIG  V   LL+ GY  +   +     A  L  L PG       V   ++  + A    ++  + + H+ASP  +++  D + +LL PAV+GTL +LEAA+    ++R+V+TSS +++      P   KV  E  W  + +
Sbjct:    4 KLVLVTGVTGFIGAHVAEQLLQAGY-RVRGTVRSMEKADELIRLNPGLKDKIEFVIVKDVSASNAFDGVLKDVELICHIASPFFVENVTDNKSQLLDPAVKGTLGILEAAQGVKSIKRIVITSSFAAVGNFQIDPHNNKVYTEKDWNPITY 153          
The following BLAST results are available for this feature:
BLAST of FC920277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DFRA_HORVU2.437e-2238.31Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=... [more]
DFRA_ANTMA2.281e-2038.31Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]
DFRA_MEDSA1.530e-1635.46Dihydroflavonol-4-reductase (Fragment) OS=Medicago... [more]
BAN_ARATH3.408e-1629.93Leucoanthocyanidin reductase OS=Arabidopsis thalia... [more]
ALD2_SPOSA4.166e-1439.74Aldehyde reductase 2 OS=Sporobolomyces salmonicolo... [more]
YGD9_YEAST2.528e-1134.87Putative uncharacterized oxidoreductase YGL039W OS... [more]
YKJ7_SCHPO7.354e-1131.13Putative uncharacterized oxidoreductase C513.07 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32006C01EF RVDevelop1 Citrus clementina cDNA clone C32006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920277 ID=FC920277; Name=FC920277; organism=Citrus clementina; type=EST; length=505bp
GACACTTCACAAAATCGTCACATAATTAAAGAGAAAAAGGATGAACGGGC
CAGAAAAGGAAGTAGTTTGCGTGACTGGAGCCAACGGGTTCATCGGAACA
TGGGTGGTCCGAACCCTTCTAGAAAAAGGCTACACCAACATTCACGCTGC
CATCTTTCCCGGCACTGACGCATCCCACTTGTTCAGCCTCCCAGGCGCCA
CCAAGCTCAACGTCCGTGTTTACGAGGCCAATATCTTAGACAACGAAGCA
ATTTCCAGGGCCATCGAGGGTTGCAAGGGGGTCTTCCATCTTGCCTCTCC
TCCCACCCTGGATGATCCCAAGGACCCCGAAAAGGAGCTGCTCATTCCTG
CTGTTCAAGGCACCCTCAATGTCTTAGAGGCTGCCAAGAAGTTTGGTGTC
AGGCGTGTGGTGCTCACCAGCTCCATTTCTTCCATTGTGCCTAATCCCAA
TTGGCCTCAAGGCAAGGTCATTGATGAAACTTCTTGGACCGACCTTGACT
TTTGC
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