FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.967e-63
Identity = 111/195 (56.92%), Postives = 137/195 (70.26%), Query Frame = 2
Query:  110 SPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            SPF FSRR TG +DV  K+L+CG+CHSDLH  +NEWG+T YPIVPGHEIVG VT+VG+ V KFK GD VGVG LV SC  CE+C    EN C   + TY   + DG+ TYGGY+D +V DQH+VLR+P+N+PLD+GAPLLCAGIT YSP++Y+G+ +P                  + KAFG  VTVISTS  K+
Sbjct:    3 SPFKFSRRATGDNDVRFKVLYCGVCHSDLHMVKNEWGMTTYPIVPGHEIVGRVTEVGSKVEKFKVGDAVGVGCLVGSCLSCENCDDDSENNCAKQVQTYAFTNVDGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVKMAKAFGAHVTVISTSESKK 197          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.962e-62
Identity = 112/217 (51.61%), Postives = 147/217 (67.74%), Query Frame = 2
Query:   38 AKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD-AGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSP 685
            A   E E P+KA GWAARD++G  SPF+FSRR+ G +DV +++L+CGICH+DLH A+N++G + YP VPGHE++G V +VG+ V K+K GDKVGVG  V SC+ C++C   LENYCP  ILT      DGT TYGGYSD +VVD+H+V R P+ +PLD  G+  LC G + +SP+KYYG+ +P                    K  GLK+TVISTSP
Sbjct:    3 ASQVEFEHPRKAFGWAARDSSGLLSPFNFSRRDIGEEDVALEVLYCGICHTDLHMAKNDFGNSIYPYVPGHEVIGIVAEVGSKVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTTTYGGYSDSMVVDEHFVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKPGLHVGVVGLGGLGHMVAKFAKTHGLKITVISTSP 218          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.868e-62
Identity = 107/213 (50.23%), Postives = 147/213 (69.01%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +   G+AARD++G  SP+ ++ R  G +DV +++++CGICHSDL    NE G++NYP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C   +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TVYSPMK++GMTEP                  I KAFGL VTVIS+S KK+
Sbjct:    5 ESERTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKK 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.868e-62
Identity = 107/213 (50.23%), Postives = 147/213 (69.01%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +   G+AARD++G  SP+ ++ R  G +DV +++++CGICHSDL    NE G++NYP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C   +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TVYSPMK++GMTEP                  I KAFGL VTVIS+S KK+
Sbjct:    5 ESEKTVTGYAARDSSGHLSPYTYTLRNKGPEDVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKK 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.598e-62
Identity = 107/213 (50.23%), Postives = 149/213 (69.95%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +   G+AARD++G  SP+ ++ R+ G +DV +K+++CGICHSDL   RNE G+++YP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C Q +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TV+SPMK++ MTEP                  I KAFGL VTVIS+S KK+
Sbjct:    5 ESEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHLGVKIAKAFGLHVTVISSSDKKK 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.617e-62
Identity = 107/213 (50.23%), Postives = 149/213 (69.95%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +   G+AARD++G  SP+ ++ R+ G +DV +K+++CGICHSDL   RNE G+++YP+VPGHE+VG VT++G+ V KFK G+ VGVG +V SC+ C +C Q +E YC   I TYN ++ DGT T GG++  +VVDQ +V+R P+N+PL+  APLLCAG+TV+SPMK++ MTEP                  I KAFGL VTVIS+S KK+
Sbjct:    5 ETEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKK 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.165e-58
Identity = 107/221 (48.42%), Postives = 140/221 (63.35%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN------MPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            +QP+   GWAARD  G  SPF +  R  G +DV +KILFCGICHSDL   +NEWG   YP+VPGHEIVG V +VG++V++F  GD VGVG + ++C+ C +C+ G ENYC  ++ ++N+   DG   +GG+S+L VV+Q YV+R P         PLD  APLLCAG+TVY PM+  G+  P                   GKAFG+KVTVISTSP K  +
Sbjct:    3 QQPKMVTGWAARDANGLLSPFSYPLRAKGDEDVVVKILFCGICHSDLSTIKNEWGNAKYPVVPGHEIVGVVAEVGSSVARFAAGDTVGVGYIASTCRACANCRDGFENYCAGLVPSFNAALPDGATVHGGFSELAVVNQRYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRPGVHLGVAGLGGLGHLAVKFGKAFGVKVTVISTSPWKEAE 223          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.090e-56
Identity = 100/210 (47.62%), Postives = 141/210 (67.14%), Query Frame = 2
Query:   65 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            +KA+GWAARD +G  SP+ ++ R TGADDV IK++ CGICH+D+H  +N+ G++NYP+VPGHE+VG V +VG++VSKF  GD VGVGV+V  C  C+ C   LE YC   I +YN +  DG  T GG++D ++V+Q +V++ P+ M ++  APLLCAG+TVYSP+ ++G+                     I KA G  VTVIS+S KK+
Sbjct:    9 KKALGWAARDPSGVLSPYSYTLRSTGADDVYIKVICCGICHTDIHQIKNDLGMSNYPMVPGHEVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLKGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKK 218          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.424e-56
Identity = 99/213 (46.48%), Postives = 144/213 (67.61%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            E  +K +GWAA D+TG  +P+ +S R+TG +DV IK++ CG+CH+D+H  +N+ G+++YP+VPGHE+VG V +VG++V++FK GD VGVGV+V SC+ C  C+  +E YC   I +YN +  DG  T GG+++ +VV Q +V+R PD M  +  APLLCAG+TVYSP+K++G+ +                   I KA G  VTVIS+S KKR
Sbjct:    5 ETERKIVGWAATDSTGHLAPYTYSLRDTGPEDVFIKVISCGVCHTDIHQIKNDLGMSHYPMVPGHEVVGEVVEVGSDVTRFKVGDVVGVGVIVGSCKNCHPCKSEIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVHQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKR 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.424e-56
Identity = 98/212 (46.23%), Postives = 139/212 (65.57%), Query Frame = 2
Query:   65 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            +K +GWAARD TG  SP+ ++ R TG +DV +K+L+CGICH+D+H A+N  G + YP+VPGHE+VG V +VG  V+K+  GD VGVGV+V  C++C  C+  +E YC   I +YN +  DG  T GG++  +VVDQ +V++ P  +  +  APLLCAG+TVYSP+K++G+T P                  + KA G  VTVIS+S KKR +
Sbjct:    8 RKVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVAKYGVGDVVGVGVIVGCCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAE 219          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MTDH_PETCR5.967e-6356.92Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
MTDH3_STYHU2.962e-6251.61Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH7_PICAB3.868e-6250.23Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH2_PICAB3.868e-6250.23Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH_PINTA6.598e-6250.23Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA8.617e-6250.23Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH9_ORYSJ1.165e-5848.42Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH4_ARATH1.090e-5647.62Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH_POPDE1.424e-5646.48Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH_MAIZE1.424e-5646.23Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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