FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.127e-52
Identity = 100/205 (48.78%), Postives = 128/205 (62.44%), Query Frame = 2
Query:   80 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            WAARD +G  SP   +RR    DDV++ I  CG+C++D+  +RN+ G + YP+VPGHEI G VTKVG NV +FK GD VGVG  V SC++CE C +G E  C   + T+N ID DG+ T GGYS  IVV + Y  + P + PL++ APLLCAGITVY+PM  + M +P                   GKAFGL VTV STS  K+
Sbjct:   14 WAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDSKYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKK 218          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.778e-52
Identity = 93/207 (44.93%), Postives = 137/207 (66.18%), Query Frame = 2
Query:   74 IGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            +G AA+D +G  +P+ ++ R TG DDV IKI +CG+CHSDLH  +N+ G++NYP+VPGHE+VG V +VG+NV++FK G+ VGVG+LV  C+ C +C   +E YC   I +YN +  DG  T GG+++  VV+Q +V++ P+ +  +  APLLCAG+TVYSP+ ++G+  P                  + KA G  VTVIS+S KK+
Sbjct:   12 VGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKK 218          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.629e-52
Identity = 93/215 (43.26%), Postives = 135/215 (62.79%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV + +V++ PD +  +  APL+CAG+TVYSP+  +G+ +                   I KA G  VTVIS+S KKR +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTE 219          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.739e-52
Identity = 92/215 (42.79%), Postives = 135/215 (62.79%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CG+CHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV + +V++ PD +  +  APL+CAG+TVYSP+  +G+ +                   I KA G  VTVIS+S KKR +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGVCHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTE 219          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.189e-52
Identity = 101/205 (49.27%), Postives = 130/205 (63.41%), Query Frame = 2
Query:   80 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +AA   T   +    +RR+ G  DV I I F GICHSD+H  + EWG  NYP+VPGHEI G VT VG+ V+K+++GD+VGVG  V SC++C SC +G+E YC P    TYNSI +DG  T GGYS+ IVVD++YVLR PD +PLD  APLLCAGIT+YSP++++                       +G A G  VTV+S S KK
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHWN-AGANTRVAIIGLGGLGHMGVKLGAAMGADVTVLSQSLKK 210          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.189e-52
Identity = 101/205 (49.27%), Postives = 130/205 (63.41%), Query Frame = 2
Query:   80 WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +AA   T   +    +RR+ G  DV I I F GICHSD+H  + EWG  NYP+VPGHEI G VT VG+ V+K+++GD+VGVG  V SC++C SC +G+E YC P    TYNSI +DG  T GGYS+ IVVD++YVLR PD +PLD  APLLCAGIT+YSP++++                       +G A G  VTV+S S KK
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHWN-AGANTRVAIIGLGGLGHMGVKLGAAMGADVTVLSQSLKK 210          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.379e-51
Identity = 92/215 (42.79%), Postives = 134/215 (62.33%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV + +V++ PD +  +  APL+CAG+TVY P+  +G+ +                   I KA G  VTVIS+S KKR +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYRPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTE 219          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.291e-49
Identity = 92/215 (42.79%), Postives = 134/215 (62.33%), Query Frame = 2
Query:   56 EQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            E+ +   GWAARD +G  SP+ +S R TG +D+ IK+L CGICHSD+H  +N+ G+++YP+VPGHE+VG V +VG+ V+K++ GD+VG G++V  C+ C  C    E YC   I  YN +  DG  T GG++  IVV Q +V++ PD +  +  A ++CAG+TVYSP+  +G+ +                   I KA G  VTVIS+S KKR +
Sbjct:    5 EKERTTTGWAARDPSGVLSPYTYSLRNTGPEDLYIKVLSCGICHSDIHQIKNDLGMSHYPMVPGHEVVGEVLEVGSEVTKYRVGDRVGTGIVVGCCRSCGPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGQRFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTE 218          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.958e-43
Identity = 98/211 (46.45%), Postives = 118/211 (55.92%), Query Frame = 2
Query:   68 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRF-PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            KA+G  A        P   +RRE G +DV I+I +CG+CHSDLH  R+EW  T YP VPGHEIVG V  VG+ V K+  GD VGVG +V SC+ CE C+ GLENYC +M  TYNS   D    T GGYS  IVV + YVLR       L A APLLCAGIT YSP++++    P                  +  A G  V   +TS  KR
Sbjct:    4 KAVG--AYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR 211          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.404e-42
Identity = 89/197 (45.18%), Postives = 112/197 (56.85%), Query Frame = 2
Query:  107 FSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            F      RR     DV I I F GICHSD+H A +EWG   +P+VPGHEI G VT VG  V+K   GD+VGVG  V SC +CE C    E +C   ++ TYNS+D DG  TYGGYS  IVV   +V+R PD + +D  +PLLCAGIT YSP+K++ +  P                     A G +VTV+S S  K+
Sbjct:   19 FEQTTIERRGLRPHDVLIDIKFSGICHSDIHSAFDEWGGGIFPMVPGHEIAGVVTAVGTKVTKLAVGDRVGVGCFVDSCGECEYCLNAEEQFCTKGVVQTYNSVDYDGNPTYGGYSQKIVVTDRFVVRIPDRLEMDVASPLLCAGITTYSPLKHWNV-GPGKKVAIVGVGGLGHLAIQFAHAMGAEVTVLSRSMNKK 214          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
CADH1_ARATH2.127e-5248.78Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH_MEDSA2.778e-5244.93Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH_EUCGL3.629e-5243.26Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_EUCGU4.739e-5242.79Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
ADHC_MYCTU6.189e-5249.27NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO6.189e-5249.27NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH1_EUCGU1.379e-5142.79Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH_EUCBO1.291e-4942.79Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
YAHK_ECOLI8.958e-4346.45Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADHA_BACSU3.404e-4245.18Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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