FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 57/144 (39.58%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  134 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            + G   V IK    G+CH+DLH A+ +W V  N P +PGHE VG V K+G  V++ KEGD+VGV  L  +C  C  C+ G E  C +   T  S+D       G ++   + D  +V R P  +     AP+LCAG+TVY  +K
Sbjct:   24 QPGPGQVLIKYEATGVCHTDLHAAKGDWPVRPNPPFIPGHEGVGYVAKLGAEVTRLKEGDRVGVPWLHTACGCCTPCRTGWETLCGSQQNTGYSVD-------GTFAQYGLADPDFVGRLPARLEFGPAAPVLCAGVTVYKGLK 160          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_EMENI (Alcohol dehydrogenase 1 OS=Emericella nidulans GN=alcA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 58/186 (31.18%), Postives = 87/186 (46.77%), Query Frame = 2
Query:  140 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            G D + +KI + G+CH+DLH     W +    P+V GHE  G V   G  V +F+ GD+ G+  L  SC +CE C+Q  +  C    L+  ++D       G +    +    +  + P  +PLDA AP+LCAGITVY  +K  G+                       KA G++V  +    +KR
Sbjct:   30 GPDQILVKIRYSGVCHTDLHAMMGHWPIPVKMPLVGGHEGAGIVVAKGELVHEFEIGDQAGIKWLNGSCGECEFCRQSDDPLCARAQLSGYTVD-------GTFQQYALGKASHASKIPAGVPLDAAAPVLCAGITVYKGLKEAGVRPGQTVAIVGAGGGLGSLAQQYAKAMGIRVVAVDGGDEKR 208          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH2_EMENI (Alcohol dehydrogenase 2 OS=Emericella nidulans GN=alcB PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.139e-21
Identity = 64/181 (35.36%), Postives = 90/181 (49.72%), Query Frame = 2
Query:   44 SPETEQPQKAIGWAARDNTGTFSP--FHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPG----HEIVGTVTKVGNNV--SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +PE  + QKA+ +   DN GT S         E G ++V I +   G+CHSD     N W +  +P  PG    HE VG V K+G     S  K GD+VGV  + ++C +C  CQ G +  C N  ++       G  T G +   ++    YV   PD +P    APLLCAG+TVY+ +K
Sbjct:    3 APEIPKKQKAVIY---DNPGTVSTKVVELDVPEPGDNEVLINLTHSGVCHSDFGIMTNTWKILPFPTQPGQVGGHEGVGKVVKLGAGAEASGLKIGDRVGVKWISSACGQCPPCQDGADGLCFNQKVS-------GYYTPGTFQQYVLGPAQYVTPIPDGLPSAEAAPLLCAGVTVYASLK 173          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_NEUCR (Alcohol dehydrogenase 1 OS=Neurospora crassa GN=adh-1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.536e-21
Identity = 55/177 (31.07%), Postives = 86/177 (48.59%), Query Frame = 2
Query:   47 PETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 574
            P+ E P++          G         ++ G D+V I + + G+CH+DLH  + +W + T  P+V GHE  G V   G  V++ + GD  G+  L  SC  C  C Q  E  CP+ +L+  ++D       G +    +    +V + P    L+  AP+LCAGITVY  +K  G+
Sbjct:    2 PQFEIPEQQWAQVVEKKGGPVVFKQIPVQKPGPDEVLINVKYSGVCHTDLHAMKGDWPLATKMPLVGGHEGAGVVVAKGELVTEVEVGDHAGIKWLNGSCLACSFCMQADEPLCPHALLSGYTVD-------GSFQQYAIAKAAHVAKIPKGCDLETTAPVLCAGITVYKGLKESGV 171          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_STAES (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=adh PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 48/149 (32.21%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  131 RETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 574
            RE    +  +K  +CG+CH+DLH    ++G VT   +  GHE +G V K+ +NV   K GD+V +  + A+C  CE C  G E  C +++    ++D       G  ++ ++VD +Y ++ P+N+   A + + CAG+T Y  +K  G+
Sbjct:   20 RELRPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGRVIKIADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVD-------GAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGI 159          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH5_YEAST (Alcohol dehydrogenase 5 OS=Saccharomyces cerevisiae GN=ADH5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  134 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            E   +++ + + + G+CHSDLH    +W     +P++ GHE  G V K+G+NV  +K GD  G+  L  +C  CE C+ G E+ CP        +D  G    G + +    D       P N+ L   AP+LCAGITVY  +K
Sbjct:   31 EPKPNEILVHVKYSGVCHSDLHAWHGDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCP-------YLDGTGFTHDGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITVYKALK 167          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH5_SACPS (Alcohol dehydrogenase 5 OS=Saccharomyces pastorianus GN=ADH5 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 2
Query:  134 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            E   +++ + + + G+CHSDLH    +W     +P++ GHE  G V K+G+NV  +K GD  G+  L  +C  CE C+ G E+ CP        +D  G    G + +    D       P N+ L   AP+LCAGITVY  +K
Sbjct:   31 EPKPNEILVHVKYSGVCHSDLHAWHGDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCP-------YLDGTGFTHDGTFQEYATADAVQAAHIPPNVNLAEVAPILCAGITVYKALK 167          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 48/149 (32.21%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  131 RETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 574
            RE    +  +K  +CG+CH+DLH    ++G VT   +  GHE +G V +V +NV   K GD+V +  + A+C  CE C  G E  C +++    ++D       G  ++ ++VD +Y ++ P+N+   A + + CAG+T Y  +K  G+
Sbjct:   20 RELKPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTL--GHEGIGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVD-------GAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGI 159          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH1_CANAL (Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 56/183 (30.60%), Postives = 79/183 (43.17%), Query Frame = 2
Query:  146 DDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +++ I + + G+CH+DLH  + +W + T  P+V GHE  G V  +G NV  +K GD  G+  L  SC  CE CQQG E  C          D  G    G +      D     + P    L   AP+LCAG+TVY  +K   +                       +A GL+V  I    +K
Sbjct:   34 NELLIHVKYSGVCHTDLHARKGDWPLATKLPLVGGHEGAGVVVGMGENVKGWKIGDFAGIKWLNGSCMSCEFCQQGAEPNC-------GEADLSGYTHDGSFEQYATADAVQAAKIPAGTDLANVAPILCAGVTVYKALKTADLAAGQWVAISGAGGGLGSLAVQYARAMGLRVVAIDGGDEK 209          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: ADH3_YEAST (Alcohol dehydrogenase 3, mitochondrial OS=Saccharomyces cerevisiae GN=ADH3 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 2
Query:   29 ESMAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 562
            +S A  P+T++     G    +N G          E   +++ I + + G+CH+DLH    +W +    P+V GHE  G V K+G+NV  +K GD  G+  L  SC  CE C+ G E+ CP+        D  G    G +      D     +      L   AP+LCAG+TVY  +K
Sbjct:   25 QSTAAIPKTQK-----GVIFYENKGKLHYKDIPVPEPKPNEILINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVKLGSNVKGWKVGDLAGIKWLNGSCMTCEFCESGHESNCPD-------ADLSGYTHDGSFQQFATADAIQAAKIQQGTDLAEVAPILCAGVTVYKALK 191          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
ADHA_RHIME1.030e-2239.58Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]
ADH1_EMENI3.913e-2231.18Alcohol dehydrogenase 1 OS=Emericella nidulans GN=... [more]
ADH2_EMENI1.139e-2135.36Alcohol dehydrogenase 2 OS=Emericella nidulans GN=... [more]
ADH1_NEUCR2.536e-2131.07Alcohol dehydrogenase 1 OS=Neurospora crassa GN=ad... [more]
ADH_STAES2.147e-2032.21Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH5_YEAST2.147e-2034.72Alcohol dehydrogenase 5 OS=Saccharomyces cerevisia... [more]
ADH5_SACPS2.147e-2034.72Alcohol dehydrogenase 5 OS=Saccharomyces pastorian... [more]
ADH_STAEQ4.783e-2032.21Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH1_CANAL8.159e-2030.60Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH... [more]
ADH3_YEAST1.066e-1931.28Alcohol dehydrogenase 3, mitochondrial OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
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