FC920281

Overview
NameFC920281
Unique NameFC920281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14111 contig Ccv1_Contig14111:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920281 vs. ExPASy Swiss-Prot
Match: 2AAA_CAEEL (Probable serine/threonine-protein phosphatase PP2A regulatory subunit OS=Caenorhabditis elegans GN=paa-1 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.165e-59
Identity = 111/186 (59.68%), Postives = 143/186 (76.88%), Query Frame = 3
Query:  132 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMXRRSAASNLGKF 689
            D+ LYPIAVLIDEL+N+D+ LRLNSIR+LSTIA ALG ERTR ELI FL++   D+DEVLL +AE+LG F P VGG +H H LL PLE L TVEET VRDKAVESL +I  +   + L + ++P+++RLA G+WFT+R SACGLF + YP     +K+EL+S++  LC+DD PM RR+AA+ LG+F
Sbjct:    9 DDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDTIYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADKHSSASLEEHFVPMLRRLATGDWFTSRTSACGLFSVVYPRVSPAIKSELKSMFRTLCRDDTPMVRRAAAAKLGEF 194          
BLAST of FC920281 vs. ExPASy Swiss-Prot
Match: 2AAA_DROME (Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit OS=Drosophila melanogaster GN=Pp2A-29B PE=1 SV=4)

HSP 1 Score: 226.868 bits (577), Expect = 8.052e-59
Identity = 114/187 (60.96%), Postives = 144/187 (77.01%), Query Frame = 3
Query:  129 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMXRRSAASNLGKF 689
            VD+ LYPIAVLIDELKN+D+QLRLNSI++LSTIA ALGEERTR ELIPFL+E   D+DEVLLA+A++LG F   VGG E A  L+PPLE+L TVEET VRDKAVESL  + ++    DL    +P ++RL +G+WFT+R SACGLF + YP     +K ELR+ + +LCQD+ PM RR+AA+ LG+F
Sbjct:    8 VDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGEERTRSELIPFLTETIYDEDEVLLALADQLGNFTSLVGGPEFAMYLIPPLESLATVEETVVRDKAVESLRTVAAEHSAQDLEIHVVPTLQRLVSGDWFTSRTSACGLFSVCYPRVTQPVKAELRANFRKLCQDETPMVRRAAANKLGEF 194          
BLAST of FC920281 vs. ExPASy Swiss-Prot
Match: 2AAA_SCHPO (Protein phosphatase PP2A regulatory subunit A OS=Schizosaccharomyces pombe GN=paa1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.279e-52
Identity = 104/184 (56.52%), Postives = 135/184 (73.37%), Query Frame = 3
Query:  141 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-ILKTELRSIYTQLCQDDMPMXRRSAASNLGKF 689
            LYPIAVLIDELK+D+I  RLN++ RLSTIA ALG ERTR ELIPFL E+ DD+DEVL A+A++LG F+ YVGG E+AHVLL PLE L   EET VRDKAV+SL ++   + +  L  +++PLV+RL+  EWFT+R S+ GL+  AY  + +  +K  LR  ++ LC D+ PM RR AA+N  KF
Sbjct:   10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSALADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFVPLVQRLSTAEWFTSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAPMVRRPAATNCAKF 193          
BLAST of FC920281 vs. ExPASy Swiss-Prot
Match: 2AAA_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.626e-51
Identity = 100/183 (54.64%), Postives = 135/183 (73.77%), Query Frame = 3
Query:  144 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMXRRSAASNLGKF 689
            +PI +LIDELKN+DIQLRLNSI++L +IA+ALG ERTR ELIP+L ++  +D+DEVL+ ++EELG  I +VGG EHA  LLPPL+ L   EE  VR+KAVESLC+I  ++  S   + ++PL+  L+  +WFT+R SACGLF ++YP A   +K  LR  +  LC DD PM +R+AA+NLG F
Sbjct:   12 HPIVILIDELKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYLQDSVLEDEDEVLVVLSEELGNLIEFVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKIAKEIPTSSFEESFLPLLFSLSKADWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCHDDTPMVKRAAATNLGSF 194          
BLAST of FC920281 vs. ExPASy Swiss-Prot
Match: 2AAA_YEAST (Protein phosphatase PP2A regulatory subunit A OS=Saccharomyces cerevisiae GN=TPD3 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.817e-46
Identity = 90/185 (48.65%), Postives = 131/185 (70.81%), Query Frame = 3
Query:  132 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMXRRSAASNL 680
            +E LYP+A+L+DELK+DDI  R+ ++++L TIA ALG ERTR ELIPFL+E   DD+DEV   +AE+LG F+PY+GG ++A +LLP LE L + EET VR+KAV+SL  +  ++ +  L   ++PL++ LA  +WF+++VSACGLF  +      D L+  + ++Y QL QDD PM +R+   NL
Sbjct:   33 NESLYPLALLMDELKHDDIANRVEAMKKLDTIALALGPERTRNELIPFLTEVAQDDEDEVFAVLAEQLGKFVPYIGGPQYATILLPVLEILASAEETLVREKAVDSLNNVAQELSQEQLFSDFVPLIEHLATADWFSSKVSACGLFKSVIVRIKDDSLRKNILALYLQLAQDDTPMVKRAVGKNL 217          
The following BLAST results are available for this feature:
BLAST of FC920281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
2AAA_CAEEL6.165e-5959.68Probable serine/threonine-protein phosphatase PP2A... [more]
2AAA_DROME8.052e-5960.96Serine/threonine-protein phosphatase PP2A 65 kDa r... [more]
2AAA_SCHPO4.279e-5256.52Protein phosphatase PP2A regulatory subunit A OS=S... [more]
2AAA_DICDI1.626e-5154.64Serine/threonine-protein phosphatase 2A regulatory... [more]
2AAA_YEAST7.817e-4648.65Protein phosphatase PP2A regulatory subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC32006C06EF RVDevelop1 Citrus clementina cDNA clone C32006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920281 ID=FC920281; Name=FC920281; organism=Citrus clementina; type=EST; length=690bp
GGAACAGATTCGTAAATCTCTCTCTTCTCTCTGAGCAGAGGTCGCTGCGG
GAGGATATTGAGATCGTGCTTCTGGGTAGATAGTTGATCATAAGGGTTTT
CCAAGCGTTTTGAAACACAATGGCAATGGTTGATGAACCATTATACCCAA
TAGCCGTTCTCATAGACGAGCTGAAAAATGATGACATACAGCTTAGGTTG
AACTCAATACGTAGGCTGTCAACAATTGCACGCGCTCTTGGGGAGGAGCG
GACTCGGAAGGAATTAATTCCATTTCTGAGCGAAAACAATGACGATGATG
ATGAGGTACTTCTTGCAATGGCAGAAGAGCTTGGTGTTTTCATTCCATAT
GTGGGAGGAGTTGAGCATGCCCATGTTTTGCTTCCGCCTCTGGAGACCCT
TTGTACTGTTGAGGAGACCTGCGTGAGGGACAAAGCCGTTGAGTCTTTGT
GTAGAATTGGGTCTCAGATGAGGGAGAGTGATTTGGTTGATTGGTATATT
CCTCTGGTCAAGAGACTAGCGGCTGGTGAATGGTTTACGGCTCGGGTTTC
TGCATGTGGGCTGTTTCACATTGCTTATCCAAGTGCCCCAGATATTTTAA
AGACAGAATTGCGGTCAATATACACCCAATTGTGTCAAGATGACATGCCC
ATGGNTAGGAGGTCTGCTGCATCCAATCTGGGCAAATTTG
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