FC920285

Overview
NameFC920285
Unique NameFC920285
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:90..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 52/156 (33.33%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   60 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRA 524
            M  +PA  YR I    Y +  +  G+P  K+  Y +G  +   +++   + L   E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRA 156          
BLAST of FC920285 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 46/165 (27.88%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   81 CYRQIKNKPYPK------SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLASWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSLHAQEALRRAKFKFPGRQK 551
            CYR+++  PY +        +  G     +R++ +G   +   E+ +   L + E   +   A+EA R+  NKY+    GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +   +  L+ A+ K P R +
Sbjct:    9 CYRKLE-VPYTRVSRSKNKNYIPGAKPTMVRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172          
The following BLAST results are available for this feature:
BLAST of FC920285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD1.091e-1833.3350S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ4.017e-1327.8850S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionC32006C11EF RVDevelop1 Citrus clementina cDNA clone C32006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920285 ID=FC920285; Name=FC920285; organism=Citrus clementina; type=EST; length=700bp
GCCGGGGACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGG
GCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAA
TAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGA
TCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCT
TTCTGTGTGCACTTGGCGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGC
TCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCG
GGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTG
CGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGG
TATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCA
TTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCAT
GCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAA
AAATCATTGTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGAT
TATTTGAGGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTATGCA
AAGCTTCTTGGATGTCATGGACCTTTGGCGAGTCGCAACCAGGAAGAGCT
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