FC920294

Overview
NameFC920294
Unique NameFC920294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 289
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 289
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 43/96 (44.79%), Postives = 69/96 (71.88%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 316
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 43/96 (44.79%), Postives = 69/96 (71.88%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 316
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESGTNSDIVEALNKKEH 93          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 43/96 (44.79%), Postives = 69/96 (71.88%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 316
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 43/96 (44.79%), Postives = 69/96 (71.88%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 316
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 238
            MGR ++ +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC920294 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 2
Query:   29 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 250
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
The following BLAST results are available for this feature:
BLAST of FC920294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2D_MOUSE1.319e-1550.57Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN1.319e-1550.57Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_RAT1.319e-1544.79Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PIG1.319e-1544.79Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_HUMAN1.319e-1544.79Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_BOVIN1.319e-1544.79Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
SRFC_DICDI3.839e-1554.29Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2C_PONAB5.014e-1554.05Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_MOUSE5.014e-1554.05Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN5.014e-1554.05Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC32006D10EF RVDevelop1 Citrus clementina cDNA clone C32006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920294 ID=FC920294; Name=FC920294; organism=Citrus clementina; type=EST; length=656bp
GCCGGGGGAGAAAGAAAGGACGAAGAAAATGGGAAGGGGTAGGGTTGAGT
TGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGA
AGAAATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGC
TGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTT
GCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAAC
TATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAG
TAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGA
GATCCCAAAGGAATCTCCTTGGAGAAGAACTCGGCCCTCTAAACAGCAAA
GAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAG
ATCAACAAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATA
AGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGTTGATG
GAGGGATACCAAGTGAACACACTTCAATTGAATCCTAGTGCAGAAGATTG
TGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGATACCTTCTTTCACG
CCTTGG
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