FC920296
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_PIG (Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27 Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 3 Query: 123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNS 461 PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS R++++ RI + ++LGASG+ +DFQ L + L ++++ + + DG+S PK +HS+LTR MYNRR K +PLW + Sbjct: 42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24 Identity = 67/183 (36.61%), Postives = 101/183 (55.19%), Query Frame = 3 Query: 147 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE---WA*NLSYEDGV*LLEKCMRVL 656 +VTGT+VV+ +Y+DGI+M AD GSYG + V+RI +G +LLG SGEISD Q L++ L L DN + PK H + R++Y+ R+K PL S+ +GG+ +K LG V+ +G + V TG G +L P LR+ ++ E+ + L+E+ MR+L Sbjct: 13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDN-----RRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAMRIL 190
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 3 Query: 156 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWA*NLSYEDGV*LLEKCMRVLL 659 GT+ V L K+G+++AAD S G+ I K+V +I I +H + +G++ D L+R L E LY + G + K L + L ++ +K+ P ++GG + L V M+G ED++ A G G A IL E+ +S DG+ L K + V + Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKS--TVGKEMSVKALATLLANIL--NGSKYFPYLGWFLVGGYDEKPR-LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAI 173
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12 Identity = 52/169 (30.77%), Postives = 82/169 (48.52%), Query Frame = 3 Query: 156 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWA*NLSYEDGV*LLEKCMRVLL 659 GT+ V + KDG+++AAD S G+ I ++V +I I +H + +G++ D L+R L E LY + G + K L + L +M K+ P ++GG K L V M+G ED + G G A IL E+ NL+ E+G+ L K + + Sbjct: 10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYS--QSGKRMSVKALATLLANIMNGA--KYFPYLAWFLVGGYDEKPK-LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAI 173 The following BLAST results are available for this feature:
BLAST of FC920296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920296 ID=FC920296; Name=FC920296; organism=Citrus clementina; type=EST; length=661bpback to top |