FC920296

Overview
NameFC920296
Unique NameFC920296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig641 contig Ccv1_Contig641:75..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_PIG (Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  123 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNS 461
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MYNRR K +PLW +
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.450e-24
Identity = 67/183 (36.61%), Postives = 101/183 (55.19%), Query Frame = 3
Query:  147 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE---WA*NLSYEDGV*LLEKCMRVL 656
            +VTGT+VV+ +Y+DGI+M AD  GSYG   +   V+RI  +G  +LLG SGEISD Q L++ L  L   DN       + PK  H  + R++Y+ R+K  PL  S+ +GG+             +K LG V+ +G  +    V TG G +L  P LR+        ++ E+ + L+E+ MR+L
Sbjct:   13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDN-----RRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAMRIL 190          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12
Identity = 52/169 (30.77%), Postives = 84/169 (49.70%), Query Frame = 3
Query:  156 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWA*NLSYEDGV*LLEKCMRVLL 659
            GT+ V L  K+G+++AAD   S G+ I  K+V +I  I +H  +  +G++ D   L+R L  E  LY +    G  +  K L + L  ++    +K+ P     ++GG     + L  V M+G   ED++ A G G   A  IL  E+   +S  DG+ L  K + V +
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKS--TVGKEMSVKALATLLANIL--NGSKYFPYLGWFLVGGYDEKPR-LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAI 173          
BLAST of FC920296 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 52/169 (30.77%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  156 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWA*NLSYEDGV*LLEKCMRVLL 659
            GT+ V +  KDG+++AAD   S G+ I  ++V +I  I +H  +  +G++ D   L+R L  E  LY +    G  +  K L + L  +M     K+ P     ++GG     K L  V M+G   ED +   G G   A  IL  E+  NL+ E+G+ L  K +   +
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYS--QSGKRMSVKALATLLANIMNGA--KYFPYLAWFLVGGYDEKPK-LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAI 173          
The following BLAST results are available for this feature:
BLAST of FC920296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSB4_PIG3.334e-2748.67Proteasome subunit beta type-4 (Fragment) OS=Sus s... [more]
PSB4_ENCCU3.450e-2436.61Probable proteasome subunit beta type-4 OS=Encepha... [more]
PSMB_PYRFU5.167e-1230.77Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRHO8.813e-1230.77Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]

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Properties
Property NameValue
Genbank descriptionC32006D12EF RVDevelop1 Citrus clementina cDNA clone C32006D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920296 ID=FC920296; Name=FC920296; organism=Citrus clementina; type=EST; length=661bp
GGAAGTTAGATCGTGAAGCCTCAGCTGATCAGCTTTGCTATTTACTGAGA
AAGTGAATCAAATCTCAAAACGAATTAATGGAATCGATCCAAGCCAAACA
AGGACTTGTCGGCCCTAACGACCCCATTCAAAGAACCCAGTTACCATATG
TGACTGGTACATCTGTTGTTGCGCTGAAGTACAAAGATGGCATATTAATG
GCTGCTGACATGGGAGGTTCCTATGGGTCAACAATCCGATACAAGAGTGT
GGAACGGATTAAACCTATTGGAAAGCATTCTCTACTGGGTGCCAGTGGAG
AAATAAGTGATTTTCAGGAGCTTTTGCGTAATCTTGATGAGCTTATACTT
TATGACAATATGTGGGATGATGGGAACTCTTTGGGGCCAAAAGAGTTGCA
CAGCTATTTGACCAGGGTCATGTATAACAGGCGTAACAAGTTTGATCCAT
TGTGGAACTCTCTTGTGCTTGGTGGAGTGAAAAATGGACAGAAATATCTT
GGCATGGTATCAATGATAGGAGTGAACTTTGAGGACAGCCATGTTGCAAC
TGGGTTTGGGAATCATCTTGCAAGGCCAATTCTTCGTGATGAATGGGCAT
GAAACTTGAGTTATGAAGATGGCGTTTAGTTGCTGGAAAAGTGCATGCGT
GTGCTCCTGTA
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