FC920302

Overview
NameFC920302
Unique NameFC920302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14117 contig Ccv1_Contig14117:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM2_HUMAN (Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.983e-40
Identity = 76/129 (58.91%), Postives = 104/129 (80.62%), Query Frame = 2
Query:  263 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            L LFDVDGTLTAPR+  T +M +F+++LR+ + +GVVGGSD  K+ EQLG  V+++YDYVF ENGLVA+KDGKL+  Q+++S LG   +++ +N+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+C
Sbjct:    8 LCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSC 136          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM2_MACFA (Phosphomannomutase 2 OS=Macaca fascicularis GN=PMM2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.590e-40
Identity = 76/129 (58.91%), Postives = 104/129 (80.62%), Query Frame = 2
Query:  263 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            L LFDVDGTLTAPR+  T +M +F+++LR+ + +GVVGGSD  K+ EQLG  V+++YDYVF ENGLVA+KDGKL+  Q+++S LG   +++ +N+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+C
Sbjct:    8 LCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCKQNIQSHLGEALIQDLINYCLSYIAKVKLPKKRGTFIEFRNGMLNVSPIGRSC 136          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM2_MOUSE (Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39
Identity = 74/129 (57.36%), Postives = 103/129 (79.84%), Query Frame = 2
Query:  263 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            L LFD+DGTLTAPR+  T +M  F+++LR+   +GVVGGSD  K+ EQLG  V+++YDYVF ENGLVA+KDGKL+  Q+++  LG + +++ +N+ L YIA++ +P KRGTFIEFR+GMLN+SPIGR+C
Sbjct:    4 LCLFDMDGTLTAPRQKITEEMDGFLQKLRQKTKIGVVGGSDFEKLQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCKQNIQGHLGEDVIQDLINYCLSYIANIKLPKKRGTFIEFRNGMLNVSPIGRSC 132          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM2_BOVIN (Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 75/129 (58.14%), Postives = 100/129 (77.52%), Query Frame = 2
Query:  263 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            L LFDVDGTLTAPR+  T  M  F+++LR+ + +GVVGGSD  K+ EQLG  VI +YDYVF ENGLVA++DGKL+  Q+++  LG   +++ +N+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+C
Sbjct:    8 LCLFDVDGTLTAPRQKITKDMDCFLQKLRQKIKIGVVGGSDFEKVQEQLGDDVIKKYDYVFPENGLVAYRDGKLLCKQNIQGHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSC 136          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM1_MOUSE (Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 77/138 (55.80%), Postives = 107/138 (77.54%), Query Frame = 2
Query:  242 AARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGK--TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            A RK+ +L LFDVDGTLT  R+   P++  F+++LR  V +GVVGGSD SKI+EQLG+   VI+++DYVF+ENG V +K G+L+  Q++++ LG E L++ +NF L Y+A L +P KRGTFIEFR+GMLN+SPIGR+C
Sbjct:    8 ARRKERILCLFDVDGTLTPARQKIDPEVSAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNVSPIGRSC 145          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM1_HUMAN (Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.972e-37
Identity = 77/138 (55.80%), Postives = 105/138 (76.09%), Query Frame = 2
Query:  242 AARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGK--TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            A RK+ +L LFDVDGTLT  R+   P++  F+++LR  V +GVVGGSD  KI+EQLG    VI+++DYVF+ENG V +K G+L+  Q++++ LG E L++ +NF L Y+A L +P KRGTFIEFR+GMLNISPIGR+C
Sbjct:    8 ARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIAEQLGDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNISPIGRSC 145          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_DROME (Probable phosphomannomutase OS=Drosophila melanogaster GN=CG10688 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 73/141 (51.77%), Postives = 102/141 (72.34%), Query Frame = 2
Query:  233 TPMAARKQGLLALFDVDGTLTAPRKAATPQMLEFM-RELRKVVTVGVVGGSDLSKISEQL-GKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            T  A ++  +L LFDVDGTLT PR   TP+  EF    ++   T+G+VGGSDL K+ EQL G+ +++E+D++F ENGLV  + GK +G Q++   LG E +K F+NF L Y+++LD+PIKRGTFIEFR+GM+N+ PIGR C
Sbjct:    2 TTAALKRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVGGSDLEKMFEQLNGRKILNEFDFIFPENGLVQIEGGKEVGKQNIIMHLGEETVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVCPIGRQC 142          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_CANAL (Phosphomannomutase OS=Candida albicans GN=PMM1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.921e-35
Identity = 70/128 (54.69%), Postives = 97/128 (75.78%), Query Frame = 2
Query:  263 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRN 646
            L LFDVDGTLT  R   + +M + + +LR+ V +G VGGSDLSK  EQLG  V++++DY FSENGL A+K GK + +QS  +++G EK  + + F L Y++D+D+PI+RGTFIEFR+GM+N+SPIGRN
Sbjct:   12 LVLFDVDGTLTPARLTISEEMKKTLEKLREKVVIGFVGGSDLSKQVEQLGPNVLNDFDYCFSENGLTAYKLGKELASQSFINWIGNEKYNKLVKFILRYLSDIDLPIRRGTFIEFRNGMINVSPIGRN 139          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_YEAST (Phosphomannomutase OS=Saccharomyces cerevisiae GN=SEC53 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.165e-32
Identity = 68/132 (51.52%), Postives = 94/132 (71.21%), Query Frame = 2
Query:  251 KQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRN 646
            K   L LFDVDGTLT  R   + ++ + + +LR    +G VGGSDLSK  EQLG  V+DE+DY FSENGL A++ GK + +QS  ++LG EK  +   F L Y++++D+P +RGTF+EFR+GM+N+SPIGRN
Sbjct:   11 KPETLVLFDVDGTLTPARLTVSEEVRKTLAKLRNKCCIGFVGGSDLSKQLEQLGPNVLDEFDYSFSENGLTAYRLGKELASQSFINWLGEEKYNKLAVFILRYLSEIDLPKRRGTFLEFRNGMINVSPIGRN 142          
BLAST of FC920302 vs. ExPASy Swiss-Prot
Match: PMM_ENCCU (Phosphomannomutase OS=Encephalitozoon cuniculi GN=SEC53 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 2
Query:  245 ARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFLNFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNC 649
            AR +  + LFDVDGTL+  R     +M + +  LR+ V +G VGGSDL+K  EQ+G  +++ +DY F ENG+  +K+G L   + +   LG E  KEF NF L Y++D+D+PIKRG FIE+R+ M+NISPIGRNC
Sbjct:    2 ARDEKTIFLFDVDGTLSESRAKMPEKMGKMLESLRRKVRIGFVGGSDLAKQKEQVGDNILEIFDYGFPENGVSFYKNGTLESQEKIIDVLGEEFYKEFANFVLRYLSDIDLPIKRGNFIEYRNSMINISPIGRNC 136          
The following BLAST results are available for this feature:
BLAST of FC920302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM2_HUMAN1.983e-4058.91Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 ... [more]
PMM2_MACFA2.590e-4058.91Phosphomannomutase 2 OS=Macaca fascicularis GN=PMM... [more]
PMM2_MOUSE2.864e-3957.36Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 ... [more]
PMM2_BOVIN2.424e-3858.14Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV... [more]
PMM1_MOUSE1.203e-3755.80Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 ... [more]
PMM1_HUMAN5.972e-3755.80Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 ... [more]
PMM_DROME7.799e-3751.77Probable phosphomannomutase OS=Drosophila melanoga... [more]
PMM_CANAL1.921e-3554.69Phosphomannomutase OS=Candida albicans GN=PMM1 PE=... [more]
PMM_YEAST1.165e-3251.52Phosphomannomutase OS=Saccharomyces cerevisiae GN=... [more]
PMM_ENCCU5.784e-3248.89Phosphomannomutase OS=Encephalitozoon cuniculi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32006E10EF RVDevelop1 Citrus clementina cDNA clone C32006E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920302 ID=FC920302; Name=FC920302; organism=Citrus clementina; type=EST; length=650bp
AGAGCCTGAAGCACGAGAGAAGAATCGATAAACCACTGAAGACTAATCTC
CAGATCTAACGTCACTCTCAAGTTACCCTCTAGAATGCAATTACTTCCCC
GTAACTTCCCAGCTTCCGCCATTCAAGATTTCAAGATCAAGATCTGCTTT
AAATTCCGCGTCCAAATTCAAAGCTCTGCGCTCTACTCACGCTATTCATT
CACTTCTATTCAGATAAATCTATACATTTCAAACTCCAATGGCTGCTAGG
AAGCAAGGTTTATTAGCTCTCTTTGATGTTGACGGAACTCTCACGGCTCC
GAGAAAGGCGGCAACACCACAAATGTTAGAGTTCATGCGGGAACTGAGAA
AGGTTGTTACAGTTGGAGTCGTCGGTGGATCTGATCTTTCTAAGATATCA
GAGCAGCTTGGGAAGACAGTTATTGATGAATACGATTATGTGTTTTCTGA
GAATGGTCTTGTGGCTCATAAGGATGGGAAATTAATTGGCACACAGAGCT
TGAAATCATTTCTTGGAGGCGAAAAGCTCAAGGAATTCCTAAATTTTACT
CTTCATTACATTGCTGACTTGGACATTCCAATTAAAAGGGGAACTTTCAT
TGAATTCCGAAGTGGGATGCTTAATATTTCACCAATTGGGCGAAACTGCA
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